Paludisphaera borealis: BSF38_04344
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Entry
BSF38_04344 CDS
T04622
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pbor
Paludisphaera borealis
Brite
KEGG Orthology (KO) [BR:
pbor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pbor03016
]
BSF38_04344 (rtcB)
Enzymes [BR:
pbor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BSF38_04344 (rtcB)
Transfer RNA biogenesis [BR:
pbor03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BSF38_04344 (rtcB)
Prokaryotic type
tRNA splicing ligases
BSF38_04344 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
APW62791
UniProt:
A0A1U7CV35
LinkDB
All DBs
Position
5618502..5619971
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AA seq
489 aa
AA seq
DB search
MAKTGGYEGPLEQVAPCQWRIPKTYRADMRVDGLIFADDALIGQIKKDQGPEQVVNVATL
PGIQKASLAMPDIHWGYGFCIGGVAATDPEQGGVISPGGVGYDINCGVRLLRTNLEWADI
KDRIRPLVDQLFRDIPTGVGQRGAFSFSKPELIRLLGEGVSFVVDKGYGVARDIEFAEAG
GRLDGADPGRVSERAILRGADQCGTLGSGNHFLEVQVVDRIVDATAAEVMGLREGQVTVL
IHSGSRGLGYQVCDDYLGVFKNAPKKYGFELPDWQLACAPVRSPEGQDYLGAMRAAANYA
WCNRQLLTHQAREVFARIFGKPWEALGMDLVYDVAHNIAKFEDHDVGGGVQKQVCVHRKG
ATRAFPPGHPEIPEAYAQVGQPVIIPGSMGTASWVLAGQPGSMIHSFGTSCHGAGRMMSR
TAAIRLAEGRRIDKELDAIGIIARARGHKGLAEEQPAAYKDVDLVVDVVDKVGISKKVAR
LRPVGVIKG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaccggaggctacgagggaccgctggagcaggtggctccttgccagtggcgg
attcccaagacgtatcgcgccgatatgcgggtcgacggcctgatcttcgccgacgacgcg
ctgatcggtcagatcaagaaggaccagggtcctgagcaggtggtcaacgtggcgacgctg
ccgggcatccagaaggccagcctggccatgcccgacatccactgggggtacggcttctgc
atcgggggcgtcgctgcgaccgacccggagcaggggggcgtgatctcgccgggaggggtc
ggttacgacatcaactgcggcgtccgcctgctgcggaccaacctcgaatgggcggacatt
aaagaccgcatccggccgctcgtcgaccagcttttccgcgacatccccaccggcgtaggc
cagcgcggggcgttctcgttcagcaagcccgagctgatcaggctgctgggcgagggggtc
tcgttcgtcgtcgacaagggctacggcgtcgcccgcgacatcgagttcgccgaggccggc
gggcggctcgacggcgccgaccccgggcgggtcagcgagcgggccatcctccgcggcgcc
gaccagtgcggcacgttgggctcggggaaccacttcctggaagtccaggtggtcgaccgg
atcgtcgacgcgacggccgcagaggtgatgggcctgcgcgaggggcaggtaaccgtcctg
atccactcgggctcgcgcgggctgggctaccaggtctgcgacgactacctgggcgtcttc
aagaacgcgccgaagaagtatggattcgagcttcctgactggcagctcgcctgcgcgccg
gttcggagccccgaggggcaggactacctgggagcgatgcgggccgccgccaactacgcc
tggtgcaaccgccagttgctgacgcaccaggctcgcgaagtcttcgcccggatcttcggc
aagccatgggaggcgctcgggatggacctggtctatgacgtagcgcacaacatcgccaag
ttcgaggaccacgacgtcgggggcggggtccagaagcaggtctgcgtccaccgcaagggg
gccacgcgggcgttccctccggggcatcccgagatccccgaagcgtacgcccaggtgggc
cagcccgtcatcatccccggcagcatggggacggcgagctgggtgctggccggccagccg
gggagcatgatccactcgttcggcacgagctgtcacggggccggccggatgatgagccgg
accgccgcgatccgcctggccgaggggcgccgaattgataaagaactcgacgccatcggc
atcatcgcccgggcgcgtggacacaagggactcgccgaggagcagccggcggcctataag
gacgtcgacctcgtcgtcgacgtcgtcgacaaggtcggcatctccaagaaagtcgcccgc
ctgcggcccgtcggcgtcatcaagggttaa
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