Sedimentisphaera salicampi: STSP1_00853
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Entry
STSP1_00853 CDS
T05439
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pbp
Sedimentisphaera salicampi
Pathway
pbp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STSP1_00853 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbp03019
]
STSP1_00853 (rne)
03009 Ribosome biogenesis [BR:
pbp03009
]
STSP1_00853 (rne)
Enzymes [BR:
pbp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
STSP1_00853 (rne)
Messenger RNA biogenesis [BR:
pbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STSP1_00853 (rne)
Ribosome biogenesis [BR:
pbp03009
]
Prokaryotic type
rRNA processing factors
STSP1_00853 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Antiterm
GRXCR1-2_C
Motif
Other DBs
NCBI-ProteinID:
ARN56471
UniProt:
A0A1W6LL25
LinkDB
All DBs
Position
complement(1154667..1156184)
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AA seq
505 aa
AA seq
DB search
MSREMLINVTQGEECRVAVLQDGALEELYMEREDDNSCVNNIYLGKVINVESSIQAAFVD
YGEKRHGFLHISDIHPRYYVNEGAKEKIGKRTGLKKRPPIRKCIKPGQKIVVQVIKEGVG
TKGPAVTTYLSLPGKYLVLMPWMNKVGVSQRIENEESRKRLKGIISELEGPEDAGFIVRT
AGELANKRDIQMDLKYLTRLWESIKKRMNKRQPPAELYRESDLAIRAVRDVFNTTVKRVV
CDSENVTNKIKDFFEITQPRYKKRISYYNSSEPLFHKYWIEEAVNKVKQRKVELRGGGTI
VIEQTEALVAIDVNSARAKKYKDIEQTALQTNLEAAKEIARQLRLRDMGGIIVCDFIDME
IAANRKRVEKAFRDAVKPDRAKYRILRMSQFCLVEMTRQRMRPSLERSLFRECPVCGGSG
LIKCAESVAVEILREVQIALANKRTVKVLVETSSEIAEHLLNSKRAVICEAENESEKVIE
IKQRPEMKGEEFAISCLDERGRMVL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagagaaatgctgataaatgtaacccaaggcgaagaatgccgggttgcggttttg
caggatggcgctcttgaagaactttacatggagcgggaagacgataattcctgcgtgaac
aatatctatttgggtaaggttataaatgtagagtcgagtatccaggcggcattcgtagat
tacggtgagaaacgccatggctttcttcatataagcgatatccatccgaggtactatgta
aacgaaggcgctaaggagaagatcggcaaacgtaccggcctcaagaaaaggcctccaatc
agaaagtgcatcaagcccgggcagaagattgttgtgcaggttataaaggaaggcgtggga
actaaaggccccgccgttacaacgtatctttcacttccgggtaaatatcttgttttgatg
ccgtggatgaataaggtaggggtttcacagaggattgagaatgaggagagcaggaaacgg
ctcaagggcattatttccgagctcgaggggcctgaggatgcaggcttcatcgttagaact
gctggagagcttgcaaacaaaagagatatacagatggatctcaaatatctcacaaggctg
tgggaatccatcaaaaagcggatgaacaagaggcagccgccagcagagctctacagagaa
tcagacctcgcgataagggcggttagagatgttttcaatactacagtcaagcgggtggtg
tgtgattctgaaaacgttacaaacaagattaaagatttcttcgaaataactcagccgaga
tacaaaaagcgaataagctactacaattcctcagaacctctgttccacaaatactggatt
gaggaagcggttaacaaggttaagcagcgcaaggtcgagcttcgcggcggcggcacgatt
gttatcgagcaaactgaagccctcgtggcgattgatgtaaacagcgcaagggccaagaag
tacaaagatattgagcaaaccgctctgcagacaaatcttgaagctgcaaaagaaattgcc
cgccagcttaggttaagggatatgggcggtataatcgtatgtgatttcatagatatggaa
atagccgctaaccgcaaaagggttgagaaggcattcagagatgccgttaagccggacagg
gcaaaatatcgaatactgcgtatgagccagttttgccttgtagagatgacaaggcagcga
atgaggccttcgctggagaggagccttttcagggagtgtccggtctgcggggggtcaggt
ctgataaaatgcgcagaatcggttgccgtggaaatacttcgagaagtacagattgccctt
gccaacaagcgaactgttaaagtgcttgttgaaacttcttctgagatagcagagcacctt
ttgaacagcaaaagagcagtgatatgcgaagccgaaaacgaaagcgagaaggtaattgag
atcaagcagaggcctgagatgaagggcgaggagtttgctatttcctgtcttgatgaaaga
gggagaatggttctttga
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