Sedimentisphaera salicampi: STSP1_02111
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Entry
STSP1_02111 CDS
T05439
Symbol
rpoN1
Name
(GenBank) RNA polymerase sigma-54 factor 1
KO
K03092
RNA polymerase sigma-54 factor
Organism
pbp
Sedimentisphaera salicampi
Pathway
pbp02020
Two-component system
pbp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pbp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
STSP1_02111 (rpoN1)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
STSP1_02111 (rpoN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbp03021
]
STSP1_02111 (rpoN1)
Transcription machinery [BR:
pbp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
STSP1_02111 (rpoN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
Crp
LacI
HTH_3
HTH_38
Motif
Other DBs
NCBI-ProteinID:
ARN57690
UniProt:
A0A1W6LPI2
LinkDB
All DBs
Position
complement(2765914..2767383)
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AA seq
489 aa
AA seq
DB search
MAMELQLTGQLKQELQMKLTPAMLQSMEVLQMPLMALEQKVASELSSNPVLEVDSAESVD
APEEVLEQTEDSFDEKELDVSPDNTSDSFERLDSLSGDFDGDEENYVPAKYDSDEDPKMD
ALQNTADSGISLQEHLLDQWRLFNIDSETFLAGEYIIRSLDERGYLNTELEEIEDSTEFS
SEIIQNAHELIKQLEPAGVGARSIRECLLIQIEQDDSPNPLAEKAVREHYDMLIANHLPE
LARKLGCEMDELQEVIKYLSHLDTSPGLLFGQEMDNAPIKADIIVEEDPESDDYIVRLAS
GALPPLNVSEYYEKMAADKNTPSETKKYLQENLRSARWLIEAIAQRRETLLKIAAYIVKK
QKDFFVKGRIALVPLSMQEIADYIGVHIATVSRAVSGKYAMCPNGIVPLRDFFSSGRLEG
VEDGESKGAESVKEVLKQVIEQEDKAKPFSDKKLCEEMEKKGIKIARRTVAKYRDQLAIP
SAKMRKQYK
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggaactccaactaacaggacagctcaaacaggaactccagatgaagctcaca
ccggcgatgcttcagtctatggaggttctgcagatgccgcttatggccctcgaacagaag
gttgcaagcgagctgagcagcaatcctgtgctcgaggttgacagcgcagagagcgttgat
gcccccgaagaggttcttgagcaaactgaagattccttcgatgaaaaggagctggatgta
tcccctgataacacatccgattcgttcgaaaggcttgatagcttatcgggcgattttgac
ggggatgaggaaaattatgtgccggcgaagtatgattcggatgaagacccaaaaatggac
gccctgcaaaacacagcagattctgggatctcacttcaagaacacctgctggatcagtgg
cggcttttcaatatagacagcgaaacgtttctggcgggcgaatacatcatcagaagcctc
gatgagaggggctatctcaataccgagctcgaggagattgaagattctaccgaattcagc
tctgagattatccaaaacgcccatgagctgataaagcagctcgaacctgcgggtgttggg
gcgagaagcatcagggaatgccttctgattcagatagagcaggatgattcgccaaaccct
ctcgctgaaaaggccgtgcgcgagcattacgatatgctcatagccaaccatctgcccgag
cttgccagaaagctcggctgcgaaatggatgaactgcaggaggttataaaatatctctct
catcttgatacaagccccgggcttcttttcgggcaggagatggataatgccccgattaag
gcggatattatcgtagaggaagaccccgagagcgacgattatatcgtgcggcttgcaagc
ggggctctcccgccgctgaatgtgagcgagtattacgagaagatggcggcggataaaaac
acgccttctgaaacgaagaagtatcttcaggagaatttacgttcggcgagatggctcatt
gaggccatcgcccagcgcagggaaactctgcttaagatagctgcgtatatcgtgaaaaag
cagaaggatttcttcgttaaaggaaggatcgcccttgtcccgctgtctatgcaggagatt
gctgattatatcggcgtacatatcgctacggtttcgagggcggtttcgggcaagtatgcg
atgtgtcccaatgggattgtcccgctgagagattttttcagcagcggcaggcttgagggc
gttgaagacggcgagtcgaagggggctgaatctgtgaaagaggtgctcaaacaggttatc
gaacaagaagataaagctaagccgttcagcgataagaagctatgcgaggagatggagaaa
aagggcatcaaaatcgcaagaagaaccgttgccaaataccgtgatcagctcgccatcccg
tccgctaagatgagaaagcagtacaaataa
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