Sedimentisphaera salicampi: STSP1_02216
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Entry
STSP1_02216 CDS
T05439
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pbp
Sedimentisphaera salicampi
Pathway
pbp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STSP1_02216 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbp03021
]
STSP1_02216 (rho)
03019 Messenger RNA biogenesis [BR:
pbp03019
]
STSP1_02216 (rho)
Transcription machinery [BR:
pbp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
STSP1_02216 (rho)
Messenger RNA biogenesis [BR:
pbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
STSP1_02216 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
Spore_III_AA
AAA_22
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ARN57790
UniProt:
A0A1W6LPT5
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All DBs
Position
complement(2892948..2894750)
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AA seq
600 aa
AA seq
DB search
MTDENFNDSQMEQNNPETPSEQTEGTTKKTTKKRTTKKTTKKATKKATKAASKKKAAKKK
TAEKQPEEKDVSPENNEQAEDYSAPETFSSDQVDLEETLTPAKPESEKTEEKGSEESSDE
QQKTERTRIARSSRSSEDGKAQRGYSRGYTPKSRNGRSNGSRNGKRKESAHDKYERIKKG
KLFLTELQNLTVKELQELAREEGLEDYIGLPKQNLVFKILRQRISESGLYYGEGVLEILP
DNFGFLRNPKYNYLSSPDDIYVSPSQIRRFGLRSGNIVQGQIRPPKDNEKYFALLKVEAI
NFYDPDQLKDRVVFRDLTPLHPEERFILETDPQELSTRIIDLVTPIGKGQRGLLVAPPRT
GKTVLMQKMCNAVSTNYPNVRIIVLLIDERPEEVTDFKRKVKDDVEVISSTFDEPPSRHC
QVAEMVIEKAKRRVEFGEDVVILLDSITRLARAYNTEMPHSGKILTGGVDANAMQMPKRF
FGAARNVEEGGSLSIFATALVDTGSKMDEVIFEEFKATGNMEIHLNRRLIEKRIFPAIDI
GRSGTRREELLIGSDELELVYRLRKVLSEMTPVEAVELLKTRLAKTNSNAEFLMSMSRGL
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgacagacgaaaattttaacgattcgcaaatggaacagaacaacccggaaactccctct
gaacaaacagaagggacaaccaaaaaaaccaccaagaaacgtacaaccaagaaaactact
aaaaaggctacgaaaaaagccactaaagccgcatcaaagaaaaaggctgcgaaaaagaaa
actgctgaaaaacagcctgaggaaaaagatgtgagcccggagaataatgagcaggctgag
gattactccgcgccggaaaccttctcctctgatcaggttgaccttgaagaaacgcttaca
cccgcaaagccggaaagcgaaaagacagaagaaaagggcagcgaagagagctcagatgag
cagcagaagacagaacgcacccgcattgccagaagcagcaggagctcagaggacggcaag
gcgcagcgtggttacagccggggatacacaccgaagagccggaacgggcggtctaacggc
tcacgcaacggcaagcgcaaagaatccgcccacgacaaatatgaacggatcaagaagggt
aagctcttcttaaccgaactgcagaaccttacagtaaaagagcttcaggaacttgcccgc
gaagaggggcttgaggattatattggccttccaaagcagaatctggttttcaagattctg
cgtcagcgtatttctgaaagcgggctctactacggcgaaggcgttcttgaaatcctcccg
gacaacttcggctttttgagaaatcctaaatacaactacctttccagcccggatgacatc
tacgtatctccatctcagataaggcgtttcgggcttcgcagcgggaacattgtgcagggg
cagataaggccgccgaaagacaatgaaaaatactttgccctgctcaaggttgaggcaatt
aacttctacgacccagaccagctcaaagacagggtggttttcagggatcttacgcctctt
caccctgaagagcgtttcattctcgaaacagaccctcaagagctcagcactcgtataatt
gaccttgttacgcctataggcaaggggcagagaggcttgcttgtggctccgcctcgtact
ggtaaaaccgtgcttatgcagaagatgtgtaatgcagtgagtacgaactaccctaatgta
cggataatagtgcttctgattgacgagcggcctgaagaggtaacagacttcaaacgcaaa
gttaaggatgatgtggaagttatcagctcaacgtttgacgagccgccttcaaggcattgt
caggtagctgagatggtaatagagaaggccaagaggcgtgttgagttcggtgaggatgta
gtaatccttctcgactcaatcacaaggctggcaagggcttacaatacggaaatgcctcac
agcggcaagatcctcacaggcggcgttgatgccaacgccatgcagatgccgaagcgattc
ttcggagcagcgaggaacgttgaggaaggcgggtctctatcgatatttgccactgcgctt
gtggatacaggctcgaagatggatgaagtaatctttgaggaattcaaggctacaggcaat
atggaaatccatctaaaccgcaggcttattgagaagaggatattccccgctatcgacatt
ggacgaagcggaacaaggcgggaagaactgcttataggcagcgacgagcttgagcttgtt
taccgtctgcgcaaggttctcagcgagatgacgcccgtagaggcggtagaactgctgaag
acgcgccttgcaaaaaccaacagcaacgcagaattcctcatgagtatgtctcgaggcctt
tag
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