Peptostreptococcaceae bacterium oral taxon 929: C3V37_00140
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Entry
C3V37_00140 CDS
T05383
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pbq
Peptostreptococcaceae bacterium oral taxon 929
Pathway
pbq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V37_00140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbq03021
]
C3V37_00140
03019 Messenger RNA biogenesis [BR:
pbq03019
]
C3V37_00140
Transcription machinery [BR:
pbq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C3V37_00140
Messenger RNA biogenesis [BR:
pbq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C3V37_00140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA
S1CSD-TOTE-2
AAA_22
ARM_KNTC1_2nd
AAA_24
Spore_III_AA
NACHT
SAP_new25
AAA_28
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AVM66341
LinkDB
All DBs
Position
29064..30479
Genome browser
AA seq
471 aa
AA seq
DB search
MIVDNHLDDYKLVELQNFAKNYGLKNFTKLKKLELIEYILKSIRTNHDEDAFKSCKNLDE
FFEKINNNSASIEKNKSKEEKTDSKTTKDNSIDGIETVEVTGILEILPDGFGFLRRENYS
QSDNDYYVSPTYIKKFLLRQGDEITGKVRKKDESNEENSKNAIVYINKVNGDSLDTCFKR
ADFDDLVPEYPDELIKLETTNDELSTRFIDLISPIGKGQRGLIVAPPKAGKTTLIKKIAN
AININHPEIKLIVLLIDERPEEVTDLKRSINGDVIYSTFDEDLENHIKVSQMTLERAKRL
VEHKKDVVILLDSITRLARAYNMMITPTGRSLSGGLDPGALFGPKKFFGAARNFKDKGSL
SILATALIDTGSRMDQVIYEEFKGTGNMELYLDRDLSNMRLFPAIDILNSGTRKDELLLD
EKTLKIQRKFRAMMNKNGNEYAVEYLRKFMTNTSSNKELVNSLDKALIKND
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgattgtagataatcacttagatgattataaattagtagagctacaaaattttgctaaa
aactatgggctaaaaaactttactaagttaaaaaaacttgagcttattgaatatattctt
aagagcatccgcacaaatcatgatgaggatgcttttaagtcatgtaagaatttggatgaa
ttttttgaaaaaattaataataatagcgcaagcattgaaaaaaataaatcaaaagaagaa
aaaactgattcaaaaacaactaaagataactctatagatggtattgaaacggttgaagta
acaggcatcttagagatacttccagatggttttggatttttaagaagagaaaattattca
caaagcgacaatgattattatgtttcgccaacttatataaaaaagtttttattaagacaa
ggcgacgaaatcactggcaaggtcagaaaaaaagacgaatcaaatgaagaaaattctaaa
aatgccatagtttatatcaataaggtcaatggagatagtcttgatacttgctttaagaga
gcagactttgatgatttggttccagagtatccagatgagcttattaagcttgaaacgact
aatgatgaactatcgacaaggtttattgatttaatctcacctataggcaagggacaaaga
ggacttatcgttgcgccaccaaaggctggtaagactactttaatcaaaaagatagccaat
gccattaacataaatcatccagagataaaacttatagttcttttaattgatgaaagacca
gaagaagttaccgatcttaagagaagcatcaatggagatgtgatttactcgacttttgac
gaagatcttgaaaatcatataaaggtatcgcaaatgacacttgagagagcaaagagactt
gtcgagcacaaaaaggatgtagtcattcttcttgacagcatcacaagacttgccagagca
tataacatgatgataacaccaacaggtagatcgctatcgggcggcttggatccaggcgct
ttatttggaccgaagaaattttttggagcggcaagaaacttcaaggataaaggcagtcta
agtatactcgcaactgctctgattgatactggctcgaggatggatcaagttatttacgaa
gagtttaaaggcactggaaacatggagctctatcttgatagagatttatcaaacatgaga
ctctttccagccattgacatattaaactcaggcacaaggaaggacgaattattattagat
gaaaaaactctaaagattcaaagaaagtttagagctatgatgaataagaacggaaatgaa
tacgcggttgaatatctacgtaaattcatgacaaatacatcatctaataaggaacttgtt
aacagtttagacaaagctttaattaagaatgattaa
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