Parvularcula bermudensis: PB2503_00797
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Entry
PB2503_00797 CDS
T01298
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbr
Parvularcula bermudensis
Pathway
pbr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PB2503_00797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbr03400
]
PB2503_00797
Enzymes [BR:
pbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PB2503_00797
DNA repair and recombination proteins [BR:
pbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PB2503_00797
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
UB2H
MFD_D3
AAA_16
RecG_dom3_C
Cas3-like_C_2
DHH
Motif
Other DBs
NCBI-ProteinID:
ADM08240
UniProt:
E0TB31
LinkDB
All DBs
Position
complement(59147..62638)
Genome browser
AA seq
1163 aa
AA seq
DB search
MALVSATSSISAERAWQEPGPLTVHGAPEGADALIIAQAVSQAGGLIVHIARDASRAAAL
AGSLAFFAPQVPIVRFPAWDCLPYDRLSPSPEIVAARMAALSTLNAHNGKTPLVIVTTVN
AMTQRVPSQALISTASFSARPGASVSMDELISFLTMNGYARASTVREPGDYAVRGGLIDL
FPPGTDEPLRLDFFGDTLETIRAFDPNTQMTTHQRQDVHLSAASEALLNDETISRFRSGY
LAQFGAPGDDPVYEAVSAGRRQAGMEHWLPLFYDGLETVFDHLGDALVFVDHLGDEAARE
RFDQIADYYETRREDMTAREDQKGGLDIVPYRPMPPDRLYITPAEWDAALTATRLRPLTP
FSAPEGKRAFDFGAKKGRPFTAERAAGQNVFEAVAAHIAAMRKSRKVIIAGWTAGSADRL
KSVLADHDVDGMTSALSWPEAKDQPLPVVALPLENGFETDDLCFIAEQDILGDRLVRRSK
TKRADNFLTEASSLSVGDLIVHVDHGIGRYDGLETLEVGGAPHDCLILTYQKGDKLFLPV
ENIELLSRFGSDDPSHPLDRLGGGAWQSRKAKMRERIRLMAEELIAIAAKRAARRAEELA
PPSGAYDEFAARFPYTETDDQLNAIDDVISDLSRGRPMDRLVCGDVGFGKTEVALRAAFV
AAMSGRQVAVIAPTTLLVRQHFRGFVERFQGFPVKIRQLSRFVSAKEASATREGIKNGDV
DIVIGTHALLSKHVAFRDLGLLIIDEEQHFGVKHKERLKEFRGDTHVLTLTATPIPRTLQ
LSMAGIRDLSLIATPPVDRLAVRTTIGPFDPVVARETLLREHYRGGQSFYVVPRLSDIDT
VADFLRHQVPEIKFEIGHGQMSATELEDVMNGFYDGKFDVLLATTIIESGIDVPTANTLV
VHRADMFGLAQLYQIRGRVGRSKQRAYAYLTTSPRKKMTEGAEKRLKVLQSLDTLGAGFT
LASHDLDIRGAGNLLGEEQSGNVKDVGVELYQHMLEEAVANLRDGNDETDETWSPTINIG
TAVLIPDHYVADLDVRMSLYRRLSDLTASEEIEAFAAELIDRFGPLPSEVDHLLQIVGIK
MLCRRANVEKIDAGPKGAVIGFRKEAFPNPIGLVNYLSSSPLDLKVRADQKLVFKQEWPN
ETFRLKGCRKILTILAKIAEEDA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttgtttcggcgacgtcttctatctccgccgagcgggcgtggcaggaaccgggg
ccccttaccgtccatggcgccccggagggcgccgacgccttgatcatcgcgcaggcggtg
tctcaggcgggggggcttatcgtgcatattgcgcgggacgccagtcgtgcggcggctttg
gcggggagcctggcttttttcgcgccgcaggtgccgattgtgcgctttcccgcatgggat
tgtctgccctatgatcggctgtcgccgtcgccggagattgtggcggcccgaatggcggcg
ctttcgaccctcaatgcccataatggcaagacgccgctggtcatcgtgacgactgtgaac
gcgatgacccagcgggtgcccagccaggcattgatctcgacggccagcttctcggcccgt
cccggcgcatccgtctcaatggacgaattgatcagtttcctgacgatgaacggctatgcc
cgcgcctcgacggtcagggagcctggtgattatgccgtaagggggggattgatcgatttg
ttcccgccgggaacggacgagccccttcgtctcgactttttcggcgatacgctggagacg
atccgcgccttcgatcccaatacgcagatgacgacgcatcagcgacaggatgtgcacctt
tcggcggcctccgaagcgttgctgaatgatgagacgatttcgcgatttcgttccggctat
ctcgcgcaattcggtgccccaggggacgatcccgtttatgaagcggtgtcggccggtcgc
cgtcaggcggggatggagcattggttaccgctgttctatgacggtctcgaaacggttttc
gatcacctcggcgacgccctcgtcttcgttgaccatctgggggacgaggcggcgcgcgag
cggttcgatcaaatcgccgattattatgagacccgccgcgaggacatgaccgcgcgggag
gaccaaaagggcggcctcgatatcgtgccctatcggccgatgccgccggataggctctat
atcaccccggcggaatgggatgcggcattgacggcaacccgccttcgtccgttaacgccc
ttttcggcgcccgaggggaagagagccttcgattttggggccaagaagggacggcccttt
accgccgagagggctgcgggacaaaatgtcttcgaagccgtcgcggcgcatatcgccgcc
atgcgaaaaagccggaaggtcattatcgcgggatggaccgctgggtctgcggaccgactg
aaaagcgttctggccgatcacgacgtcgacggcatgacgtccgccctgtcctggccggag
gccaaggaccagcctttgccggttgtcgctctccccctcgaaaacggttttgagacggat
gatttgtgctttatcgccgaacaagacattctcggcgatcgcctcgttcgacgaagcaag
acaaagcgggcggataatttcctcaccgaagcgtcatcgctgtccgtcggtgatttgatc
gtccatgtggatcacgggatcggtcgctatgacgggcttgaaacccttgaggttggcggc
gcgccccatgattgtctgatcctcacctatcagaagggagacaagctcttcctcccggtg
gagaacatcgagttgttgagccgtttcggctctgatgacccaagtcatcccctcgaccgc
ctgggcgggggggcctggcagtcgcgcaaggcgaaaatgcgcgagcgtatccggctgatg
gcggaggaattgattgccatcgctgcgaaacgggccgcccgccgggccgaggagctcgcg
ccgccctcgggggcttacgacgaatttgccgctcgctttccctataccgaaaccgacgat
caattgaacgccatcgacgatgtcatcagcgatctcagccgcggacgacccatggaccga
ttggtgtgcggtgatgtcgggttcgggaagaccgaagtcgccttaagggcggcgtttgtc
gccgccatgagcggtcggcaagtggcggtcatcgccccgacgacattgttggtgcgtcaa
cattttcgcggtttcgtcgaacgttttcaggggtttccggtcaagattcggcagttgtcg
cgcttcgtaagcgccaaggaggcgagcgccacgcgcgagggcatcaagaatggcgatgtc
gatatcgtgattgggacccatgccttgttgagcaagcacgtggcgtttcgcgatctcggc
ctcctgattatcgatgaagaacagcattttggggtgaagcacaaagagcgtctgaaggaa
tttcgcggcgacacccatgtcttgaccctgacggcgacgccgatcccccggaccttgcaa
ctctccatggcggggattcgggatctgtccctgattgccaccccgccggtggaccgcttg
gccgtcagaacgacgatcggcccctttgacccggtcgtggcgcgggagaccttgttgcgt
gagcattatcgcggggggcaaagtttttatgtggtgcccagactttccgatatcgacacg
gtagcagacttccttcgccatcaagtgccggagatcaagtttgaaatcggccacgggcag
atgtccgcgacggaactcgaagacgtgatgaacggcttctatgacggcaaattcgatgtg
ctgctggcaacgacgattatcgaaagcggtatcgatgtgcctacggcgaataccctcgtc
gtccatcgtgcggatatgttcggcctcgctcagctctatcaaatccgggggcgggtcggc
cgctcgaaacagcgggcctatgcctatttgacgacgtcaccgcgaaagaagatgaccgag
ggcgccgaaaagcgactgaaagtgcttcagagcctcgatacgctgggggcgggatttact
ctcgccagtcacgacctcgatattcgtggggcgggcaaccttttgggggaagagcaatcg
ggcaatgtcaaagatgtgggcgtcgaactctatcagcatatgctggaagaggcggtcgcc
aatctgcgcgacgggaatgacgagacggatgagacctggtcaccgacgatcaatattggg
accgcggtcctgatccccgatcattatgtcgccgatctggacgtccgaatgtctctttat
cgtcggctctcggatttaacggcgtccgaagagatcgaagctttcgccgcagaactgatc
gaccggttcgggccgttgccgagcgaggtggaccatttgctccagatcgtcggcatcaag
atgctctgtcggcgggcgaatgtggagaagattgatgccgggccgaagggggcagtcatc
ggcttccgcaaagaagcctttcccaatccgatcggcctcgtcaattatctcagttcaagt
cccctcgacctcaaggtcagggccgaccagaaacttgtgttcaaacaggaatggccgaac
gagacctttcggttgaaaggatgccgaaaaatcctgacgatccttgcgaaaattgccgaa
gaagacgcctga
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