Parvularcula bermudensis: PB2503_01727
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Entry
PB2503_01727 CDS
T01298
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pbr
Parvularcula bermudensis
Pathway
pbr03410
Base excision repair
pbr03430
Mismatch repair
pbr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PB2503_01727
03430 Mismatch repair
PB2503_01727
03440 Homologous recombination
PB2503_01727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbr03400
]
PB2503_01727
DNA repair and recombination proteins [BR:
pbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PB2503_01727
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PB2503_01727
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PB2503_01727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADM08424
UniProt:
E0TBT1
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All DBs
Position
complement(268751..270583)
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AA seq
610 aa
AA seq
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MSTTPLSSDDHLVETAFLGVTRSVTGRRWRRRAFDARAAETIAQRLDIDPLLSEVVAARQ
VTPDLAAAWLSPRLRDDLPDPSCLKGMDTAAARLADAIIAGETIGLFGDFDVDGTTSSAI
MARYLRAVGAAPLIHLPNRQSEGYGPNLPAFLAMKEKGASLIVTLDCGATAHGVLAAAAE
EGLEVIVVDHHLMSLPAPTAVAVVNPNRPDCLSGLTMLSAGGVTFLTLVALNRTLRERGF
FADRPPPDLLRLLDLVALSLVCDVMPLKGLGRTLTRQGLALLGHIEGAGSGNQGIRALAA
EAGAKGPAAAAHFGYAIGPRINAAGRIGHAMTAFDLLTTDDPVKAAALAAELSDLNGIRQ
GVEAAVLEEACKAAEDQGDRDAPLPLVVAGEGWHPGVIGIVAGRLKERFGRPALVISLAG
EEGKGSGRSLPGVDLGAAIGAAVEAGLLLGGGGHPMAAGLTVRRDGLGELRAFLDARLGE
AIAAAQADRVLSLDGIVAPTGITRSLHDGLLQAAPFGNGNPEPRFALADISVRELRVLKD
KHMAVTLADDTGGRARGIAFGCVGQPLGDLLEAGRAGQRLHLAGRIKPDEYRGGNAAQIH
LEDGAVVKDA
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacaactcccttgagctccgacgatcacctcgtcgagaccgcctttctcggggtc
acccgatcggtgacggggcggcgttggcgccgccgtgccttcgacgcgcgcgccgccgag
acgattgcccagcggctggacatagatcccttgctgagcgaagtggtggcggcccgccag
gtaacgccggatctggccgccgcttggctgtccccccggctccgcgatgatctgcccgac
ccctcctgcctcaaggggatggataccgctgcggcgcgccttgccgatgcgatcatcgcc
ggtgaaaccattggccttttcggggacttcgatgtcgatgggacgacgtcctcggccatc
atggcgcgctatctccgcgcggtgggggccgccccgctcattcacctgcccaatcgtcaa
tcggagggatatgggcccaacctgcccgccttcctcgcgatgaaagagaagggggcctcg
ctcatcgtcaccctcgattgcggcgctacggcccatggcgtcttggcagccgcggcagaa
gaggggctcgaggtcatcgtcgtggatcatcacttgatgtccttgcctgccccgacggcg
gtggcggtggtcaatcccaaccggcccgattgtctgtcgggattgacgatgctgtcggcc
gggggcgtcacctttttgacgctcgtggcgctcaatcggaccttacgcgagcgcggattc
ttcgccgatcggcccccccccgacctccttcgactgctcgatctcgtggcgctgagcttg
gtgtgcgatgtcatgccgctgaagggccttgggcggaccctgacccgccaggggcttgcc
cttcttgggcatatcgaaggagccgggtcgggcaatcaggggatcagggccttggccgcc
gaggccggggccaaagggccggcggcggccgcccatttcggttatgcgatcggcccccgt
atcaatgcggccgggcgcatcggccatgccatgacggccttcgacctccttaccaccgac
gatccggtcaaggcggcggccctcgcggcggagctgtccgatctcaacggtattcgtcag
ggggtcgaagccgcggtcctggaggaggcgtgcaaagccgcggaggaccagggcgaccgc
gacgcccccttgcccttggttgtcgccggtgaggggtggcatccgggggtcattggtatc
gtggccggacggctcaaggaacgctttggccgtcccgccctcgtgatctcccttgcgggg
gaggagggaaagggatcgggacggtccttgccgggggtcgatctgggggcggccatcggt
gctgcggtggaggcgggcctcttactcggtggcggcggccaccccatggcggcggggttg
acggtgcggcgggacgggcttggcgagctgcgggcgtttctggacgcgcgtctgggcgag
gccattgccgcggcgcaggccgatcgtgtcctcagcctcgacgggatagtcgcccccacg
gggatcacgcgcagcctccatgacggcctgcttcaggcggctccctttggcaatggcaat
cccgagccgcgttttgccctggccgatatatctgtgcgggagctgcgtgttctcaaggac
aagcacatggccgtcaccctggccgacgacactggaggccgggcgcgcggtattgccttt
ggttgtgtcgggcagcctctcggcgatctcctcgaggcgggccgggccgggcagcgactg
cacctggcgggccgcatcaagccggatgagtatcggggcggcaatgccgcgcagattcac
ctggaggatggcgcggtggtgaaggacgcttga
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