KEGG   Parvularcula bermudensis: PB2503_01737
Entry
PB2503_01737      CDS       T01298                                 
Name
(GenBank) DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
pbr  Parvularcula bermudensis
Pathway
pbr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pbr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PB2503_01737
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pbr03019]
    PB2503_01737
   03400 DNA repair and recombination proteins [BR:pbr03400]
    PB2503_01737
Enzymes [BR:pbr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PB2503_01737
Messenger RNA biogenesis [BR:pbr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PB2503_01737
DNA repair and recombination proteins [BR:pbr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PB2503_01737
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind ResIII AAA_22 SecA_DEAD
Other DBs
NCBI-ProteinID: ADM08426
UniProt: E0TBT3
LinkDB
Position
complement(271073..272305)
AA seq 410 aa
MAQPAVQYAPPHADSLEEGLAAFGVAAFRPGQRRVIGHLMRGEDVLALMPTGAGKSLCYQ
LPAYLLSGVAIVVSPLIALMENQVQSLHARGIRAGMIHSGRDRAQNIADWTAAREGQLDL
LYMSPERLMTGRMLSALRSLPVTLIAVDEAHCISQWGHQFRADYRQLGQLRTVFPKIPIA
AFTATADRDTEADIKAALFGGEVARVRLSLDRPNLFLGVHDKTPRDGKLHSLLAWHRGES
GIVYCRTRRGTEAVARQIEASGRRAFAYHAGLPETERLEILNAFTERRGLVIAATVAFGM
GIDKPDIRFVIHRDLPSSLEAYYQEIGRAGRDGAPAKAHLLYGRGDVIARRRLIENSEAD
SLVKQAETRRLGTMVDFAETVGCHRMALLAHFGERSPAPCGRCTGCREGR
NT seq 1233 nt   +upstreamnt  +downstreamnt
atggcgcagcctgccgttcagtacgcgcccccacacgccgattccctcgaggaggggctg
gccgccttcggagtcgccgcctttcgccccggtcagcgccgggtcatcgggcatttgatg
cggggcgaggacgtgctcgccttgatgccaacgggggcggggaaatccctttgttatcaa
ctcccagcttatttattatcaggggtggcgattgtcgtctcgccgctcatcgcgctgatg
gaaaaccaggtccagtcgctgcatgcgcggggcatcagggcgggtatgatccattcgggg
cgggatcgcgcccagaacatcgccgactggaccgctgcgcgggaaggacagctcgacctc
ctttatatgagccctgagcgcttgatgaccggccgcatgctttcggcgctgcggtcgttg
cctgtcaccttgattgccgtcgacgaagcccattgcatcagccaatggggccatcaattt
cgcgccgattaccgccaattgggccagttacgaacggtgtttcccaagatccccattgcg
gccttcacggcgacggcggaccgggacaccgaggcggatatcaaggcggcgctgttcggc
ggggaggttgcacgggttcgccttagcctcgaccggccgaacctttttctcggtgtccac
gacaaaacgccccgggatgggaagctccacagccttctggcctggcatcggggggagagc
ggcatcgtctattgtcgaacccgccgcgggacggaggccgtggcccggcaaatcgaggcg
agcgggcgtcgcgcctttgcctatcatgccggactgcccgagaccgagcggctggagatc
ctcaatgccttcactgagcggcggggcctcgtgattgcggcgacggtcgctttcgggatg
ggaatcgacaagcccgatatccgctttgtgattcaccgcgatctcccctcgagcctcgaa
gcctattaccaggaaatcgggcgggccggtcgcgatggcgcccccgcaaaggcgcatctt
ctctacggccggggtgacgtcattgcccgtcgccggttgattgagaacagcgaagcggac
tccctcgtcaaacaggcggaaacccgtcgacttggcaccatggtcgacttcgccgagacg
gtggggtgccatcgcatggccctgcttgcccatttcggcgaacggtccccggccccctgc
ggacgctgtacaggatgtcgcgagggccgataa

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