Parvularcula bermudensis: PB2503_02857
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Entry
PB2503_02857 CDS
T01298
Name
(GenBank) Exonuclease VII, large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
pbr
Parvularcula bermudensis
Pathway
pbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PB2503_02857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbr03400
]
PB2503_02857
Enzymes [BR:
pbr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
PB2503_02857
DNA repair and recombination proteins [BR:
pbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PB2503_02857
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
Gly_transporter
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ADM08648
UniProt:
E0TCQ9
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Position
complement(498540..500192)
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AA seq
550 aa
AA seq
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MATAEPADGGSGNLKEYSVSELSGAVKRTIEDGFGYVRVRGELGRVSRSGNGHCYLDLKD
ERAVLSSVIWKGGWSRLKVKPEQGMEVIATGRMTTFAGQSRYQLVIDTLEPAGAGALMAL
FEARKKALEAEGLFAAERKRPLPPMPQVIGVVTSPTGAVIRDILHRLRDRFPVHVLVWPA
VVQGEQCPKSVVAGVEGFNALPTDGPVPRPDVLIVARGGGSLEDLWGFNDEAVARAVAAS
SIPVISAIGHETDVTLIDYVADRRAPTPTAAAEMAVPVRMDLSGRLDALNVRLTQRIGHH
LEAQSLALQSAARGLGRKESLIEPAEQRFDRAVSHLTQSLKVRVERATQRMERAAGGLSA
ALVTAAVAMKAETLKGMSQRLITAPPRRWEQARSKVISARLSPHLVRRSLDRGGEEVKKI
GGRLGRLTRENVDRKSARLDDQARLLHSLSYQGVLARGFALVLDESQGVIRSPRQMRAGE
TYHLRFAEGEVPVRHLIEGETKGPAAASSAARKTPQAKTSRKSDGSQRGEPSSSDGGSLP
PQASLFGDET
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgcggaaccagccgacggcggatcgggcaatctgaaagaatacagcgtcagc
gaactctccggcgccgttaaacgaacgatcgaggacggcttcggctatgtccgggtacgg
ggagaattgggtcgggtctctcgatcgggtaatggtcattgctatctcgacctcaaggat
gagcgggccgttctgtcgtccgtgatctggaaggggggctggtcgcggctcaaggtcaag
ccagagcaggggatggaggtcatcgccaccggccgcatgacgacctttgccgggcaaagt
cgctatcagcttgtcatcgataccttggagcccgctggagcgggtgccctcatggcgctg
ttcgaggcccgcaagaaagcgctggaggcggagggattgttcgctgcggagcgcaaacgg
cccctgccgcccatgccccaagtgatcggagtcgtgacctcgccgaccggggccgtcatc
cgcgatatcctgcaccggttgagggaccggtttcccgtacatgtccttgtctggccagct
gtcgtgcagggggagcaatgtccgaaatccgtcgtcgcaggcgtagaggggtttaatgct
ctccccactgacggccccgttccgcggccggatgtcctgatcgtcgcacgggggggaggg
tccctcgaggatttgtgggggttcaatgacgaagccgtggcgcgagcggtcgcggcgtcg
tcaattccggtcatctccgcgatcgggcatgagacggacgtcacccttatcgattatgtg
gccgatcgtcgtgcgccgacgcccaccgcggcggccgagatggccgttcctgtacgaatg
gacttgagcggtcgcctcgatgcattgaatgtgcggctcacccaacggattggccatcat
ctcgaggcccaatctcttgccctgcagtccgcggcgcgggggcttggccgtaaggaaagc
ctgatcgagccggccgaacagcgcttcgatagggcggtctcgcaccttacccagtcgctg
aaggtacgggtagagagggcaacccaacggatggaacgtgcggcgggggggctcagcgcg
gccctggtgacggcggcggtggcgatgaaggcagagaccctgaagggaatgagccaacgt
ctgataacagcgccgccaagacgctgggagcaggcacggtcgaaggtgatcagtgcacgc
ctctcgcctcacctggtgcggcgctccctcgacagagggggggaggaggtcaaaaaaatc
ggcggccgcttagggcgcctgacccgcgaaaatgttgatcgcaaatcagcgcgcctcgac
gatcaagcgcgacttttgcactcgctatcctatcagggggtcctggcgcggggctttgcc
ctcgtcctcgatgagagccaaggggtgatccggtcgcctcgccagatgagggccggggaa
acataccatctgcgatttgcggagggagaggtgcctgtccgtcatctgatcgaaggggag
acgaagggacctgcggcagcgtcgtcagctgcgagaaagacgccccaggccaagacatcc
cgcaaatccgacggctcgcaaaggggcgagccttcctcctctgacggcggatcattgccg
ccgcaagccagcctgttcggcgatgagacctag
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