Parvularcula bermudensis: PB2503_05107
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Entry
PB2503_05107 CDS
T01298
Name
(GenBank) Orn/DAP/Arg decarboxylase, family 2
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
pbr
Parvularcula bermudensis
Pathway
pbr00300
Lysine biosynthesis
pbr00470
D-Amino acid metabolism
pbr01100
Metabolic pathways
pbr01110
Biosynthesis of secondary metabolites
pbr01120
Microbial metabolism in diverse environments
pbr01230
Biosynthesis of amino acids
Brite
KEGG Orthology (KO) [BR:
pbr00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PB2503_05107
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PB2503_05107
Enzymes [BR:
pbr01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
PB2503_05107
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
DUF7528
Motif
Other DBs
NCBI-ProteinID:
ADM09096
UniProt:
E0TFT1
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All DBs
Position
958275..959534
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AA seq
419 aa
AA seq
DB search
MDHFSSRHDGLYAEDVPLRRIADAVGTPLYIYSAATLRRHYDILADEFKNRDALIAFAVK
ALSNIAVLALLGRRGAGADIVSGGELYRALKAGIPAERVVFSGVAKSRGEMEAALNAGIL
QFNVESEAELAHLSAVASALGKTAPVALRVNPDVDAGTDTRISTGRKDDKFGVPFADAGR
LYRLAAALPGLRPQGLTVHIGSQITSVAPFERAAARVGGLVTSLRAEGHEVTHLDLGGGL
GIPYERAAAAPPLPVDYAATLNRATADLNVRLILEPGRLIAGNAGLFVTRIVLTKNQEGT
HYALVDGAMNDLIRPALYGARHEVMEDTPPTGVPVHHHIAGPVCESTDLFAKDVPLHEVS
AGALLAFRTAGAYGAVQASQYNTRPLVPEVLVDGDRFTVIRRRPTYEEMLSLEVIPDDF
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggatcatttcagctctcgccatgacggcctttacgctgaggacgtgccattgcggcgg
atcgcggacgcggtcggaacgcccctctacatctattccgccgcgaccttgcggcgccat
tacgacattcttgcggatgagttcaaaaatcgcgacgcgctgatcgccttcgccgtcaag
gcgttgtcgaatatcgctgtcttggcgctgctcggacggcggggcgcgggggccgacatc
gtttcgggcggcgagctttatcgggcgctcaaggcgggtattcccgccgagcgtgtggtg
ttttccggcgtggcgaagtctcggggggagatggaggcggcgctcaatgccgggatcctg
caattcaacgtcgaaagcgaggcggagttagcgcatctctcggcggtcgccagcgcgctc
ggcaagaccgcgccggtggcgctcagggtcaatcccgatgtggacgccgggacggatacc
cgcatttccacagggcgaaaggatgacaaattcggggtcccctttgccgatgccgggcgt
ctttatcgtcttgctgcggcgctgcccgggctcagaccgcagggcctaaccgtccatatt
gggtctcaaattacctctgtggcgcctttcgagcgagcggcggcacgtgttggggggctt
gtgacatccttgcgggccgaggggcatgaggtcacccatctcgacctgggcggaggcttg
ggcattccctatgagcgcgcggcggcggccccgccgctccccgtcgactacgccgcgacc
ctcaaccgggccacggcagatctcaatgtgcggctgatcctcgaaccggggcggttgatc
gcggggaatgccggcctattcgtgactcgcatcgtcctgacaaagaaccaggaaggcacc
cattatgcgctggtcgacggcgcgatgaacgatctgatccgcccggctctttacggggcg
cgacatgaggtcatggaggacacgccgccgacaggcgtgccggtccatcaccatattgcc
gggccggtttgcgaaagtaccgatctttttgccaaggacgtgccgctccatgaggtgtcg
gcgggcgcccttctcgcctttcggacggcaggggcatatggcgccgtccaggcctctcaa
tacaatacgcgtcctctggtccccgaagtcctcgtcgatggcgatcgtttcaccgtcatt
cgccgccgcccaacctatgaggaaatgctgagccttgaggtcatccccgacgatttttga
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