Pectobacterium brasiliense: B5S52_07155
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Entry
B5S52_07155 CDS
T06364
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pbra
Pectobacterium brasiliense
Pathway
pbra00040
Pentose and glucuronate interconversions
pbra01100
Metabolic pathways
pbra02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
B5S52_07155
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
B5S52_07155
Enzymes [BR:
pbra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
B5S52_07155
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Glyco_hydro_43
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-ProteinID:
ARA75660
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Position
1570678..1572246
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AA seq
522 aa
AA seq
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MFRAVIGTGRLHTCAVAIALSGLVLSGCDNSQQPVAEAAPPDLQVKTAPFGWAAQYQNTD
GKFYATTGGEGAHENSIYVVTSRQELKDALNNIRSPRYIAGDADAELKAKLEPKIIYWQG
TVRGDDLGNGRYADAEYYKTKPNKTTFDFDLYVKAFDQDYMAQLKATADAGGSDAAAASA
ELSLLKKQNGQRSQYANNQKAQIQFQVPPNTTILGVGSEAKLVEGYLSLNTLSHTFGKTD
NSNIIIRNITFQAPRDFAPAWDAGDGDKGNWNARYDSVSINASKNVWVDHCTFTDGEHPD
YQEPVLFGKHIQRHDGLLDIEDGADYLTISYNIFAEHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYPILYAIGMGFDSSILSESNVFNFQGGGA
DENLIIGAYKGSKFKDNGSWFNGNPASNLNQIALDKCSTLQEAEKVAATNSGKAVPAWAL
ETCTNELEWSPPYAYSAGKSIAAVEKYVLDNAGAGKLDISLP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagagcggttattggaactggtcgtttacatacctgtgcggtagctattgccctt
tccgggctcgtgctttccgggtgtgataatagtcagcagccagtggcagaagcggctccg
ccagatttgcaggtgaaaacggcaccgtttggctgggctgcgcaatatcagaatacggat
ggtaaattttatgcaacgacggggggcgagggcgcacatgaaaatagtatttatgtcgtc
accagccgccaggaattaaaagacgcattaaataacatccgcagcccccgttatatcgca
ggcgatgccgatgcggaattgaaggcgaagttagaacccaaaattatctactggcaaggc
acggtccgcggcgatgatttaggcaatggacgctatgcggatgctgagtattataaaacc
aagccgaataaaacgacgtttgactttgacttatacgtcaaagcgttcgaccaggattat
atggcgcagttgaaagcgacggcggatgcggggggaagtgacgcagcggcggctagcgct
gaacttagcctgcttaaaaagcaaaatggtcaacgctcgcagtatgccaacaaccagaag
gcgcagattcaatttcaggtaccgccgaataccacaattttaggtgtgggtagcgaagcg
aaactggtagaaggctatttatccctcaacaccttaagtcacacgtttggcaaaaccgat
aacagcaacatcattatccgtaatattacgtttcaggcaccgcgtgacttcgctcctgcc
tgggatgcgggcgacggtgataaaggcaactggaatgcgcgctatgattccgtgtcgatt
aacgccagcaaaaatgtctgggttgatcactgtacctttacggacggtgaacatcctgac
tatcaggaaccggtgctatttggcaaacatatccagcgccacgacggcttgctggatatc
gaagacggtgccgactacctgacgatttcctacaacatttttgccgagcatgacaaaacg
gtattaattggctccggcgatggtgataaaggggaataccgaatcacttttgaaggcaat
ttatgggacaacagcgtgcagcgttcaccgcgtgtgcgctttggtcaggtgcatttgctg
aataactaccatcgcggggcaacggatacaaattaccccattctgtatgccattgggatg
ggcttcgattcatccattctttccgaaagtaacgtgtttaatttccagggcggcggcgcg
gatgaaaatctgatcatcggtgcctacaaaggaagcaaatttaaagacaacggctcctgg
ttcaatggcaatccggcaagcaatttgaatcaaatcgcattagacaaatgcagcacattg
caagaagccgagaaggtcgccgctacgaattctggcaaagcggtacccgcatgggcgctg
gaaacctgcaccaatgaattggaatggagcccgccttatgcgtatagcgccgggaaatcc
attgccgccgttgagaaatacgtcctggacaatgccggagcggggaaactggatatttct
ctgccgtga
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