Pectobacterium brasiliense: B5S52_10025
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Entry
B5S52_10025 CDS
T06364
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pbra
Pectobacterium brasiliense
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pbra03016
]
B5S52_10025
Enzymes [BR:
pbra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B5S52_10025
Transfer RNA biogenesis [BR:
pbra03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
B5S52_10025
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ARA76192
LinkDB
All DBs
Position
complement(2177984..2179918)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTDKGFGFLEADGQKSYFIPPPHMKKVMHGDRI
TATLHTEKEREIVEPETLIEPFLTRFVGRIHKKDDRLSITPDHPLLKDAIPCRAARDVTH
DFQEGDWAVAEMRRHPLKGDRGFHAELTQYITTGDDPLVPWWVTLSRHNLERTAPEVETT
ERHDGELVRDDLTALSFVTIDSASTEDMDDALYVQENDDGSLQLTIAIADPTAYVAAGSE
LDNIARQRAFTNYLPGFNIPMLPRPLSDDICSLRPDERRPVLACRVTIAADGTLGDDIHF
FAAWIESKAKLAYDNVSDWLEDQGEWQPQNDAIAEQIRLLHRLCLARSEWRTTHALVFKD
RPDYRFLLGEKGDVLDIVVEHRRIANRIVEESMITANVCAAIVLRDKLGFGIYNVHNGFD
SASIEQAVAVLDTHGVQADAQALLTLEGFCTLRRELDAQPTQFLDSRIRRFQSFAEVSTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAAITGQAAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARYLSDKAGTDVRFNAEIIDVTRGGLRVRLLDNGAVAFIPSSFIHAVRDE
LVCSQEMGTLSVKGDVVYRQGDTLDVVIAEVRLETRSIVAKPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccgctgcttgcacagctaaaacagcaacttcactctcagacaccg
cgtgttgaaggtgtcgtcaaaggcaccgataaaggatttggctttcttgaagctgacgga
caaaaaagctatttcattccccctccgcacatgaaaaaagtgatgcacggtgaccggatt
accgccaccctgcatacggaaaaagagcgggaaattgtcgagccagaaacgctgatcgaa
cccttccttacccgatttgttgggcgcatccataaaaaagacgaccgcttatccattacg
cctgaccacccgctgctgaaagatgccatcccttgccgcgccgcgcgcgatgtcacgcac
gattttcaggaaggcgattgggccgtagccgaaatgcgccgtcacccgttgaagggcgac
cgtggatttcatgctgaactgacgcagtacatcacgacgggcgatgacccgctggtgccg
tggtgggtgacattgtcacgtcataatctggagcgtacggccccagaggttgaaacgact
gagcgccatgatggcgaactcgtccgtgacgatctcaccgcgctgagctttgtcactatc
gacagcgccagcactgaagatatggacgatgcgctatacgtacaggaaaacgacgatggt
tcactgcaattaaccatcgcgattgccgatccgaccgcgtatgtcgcggcgggtagcgag
ctggacaacattgcacgccagcgcgcctttaccaactatctgcctggcttcaacatcccg
atgctgccgcgcccgctgtcggacgatatctgttccctgcgcccggacgagcgtcgccct
gtcctcgcctgccgcgtgacgattgccgccgacggtacgctgggtgacgacattcacttc
tttgctgcctggatcgaatccaaagccaagttagcgtatgacaacgtctccgactggctg
gaagatcaaggcgaatggcagccgcaaaacgacgcgattgccgaacaaattcgtttgctg
caccgcctctgtctggctcgtagcgaatggcgcaccacccacgcgctggtgtttaaagat
cgcccggattaccgcttcctgctgggtgagaaaggcgacgtgttggatatcgtggttgaa
catcgccgcatcgccaaccgtatcgttgaagaatccatgattacggccaacgtctgtgcg
gccattgtgctgcgcgataagctgggcttcggcatctataacgtgcataacggcttcgat
tctgcctcgatcgaacaagcagttgccgtattggatacccacggcgttcaggccgatgcg
caagcgctgttgacactggagggcttctgtacgctgcgccgcgagctggatgcccagccg
acgcagttcctggacagccgcattcgccgcttccagtctttcgcggaagtcagtaccacg
ccggggccgcactttggtctggggctggaagcttacgctacctggacatcgccaatccgt
aaatacggcgacatggtaaaccaccgtttgttgaaagcggctatcaccggacaggctgcg
gaaaaaccgcaggacgacgtcacggtacaactggccgaacgccgccgccttaatcgtatg
gctgagcgtgatgttggcgactggctgtacgctcgctacctcagcgacaaagcgggtacc
gacgtgcgcttcaatgcggaaatcattgacgtcacacgcggtggcctgcgcgttcgcctg
ctggataacggcgcagtggcgtttatcccgtcctccttcattcacgccgtgcgcgatgaa
ctggtgtgcagtcaggaaatgggcaccctctcagtgaaaggcgacgtggtttatcgtcag
ggggatacgctggacgtggtcatcgctgaagtgcgtctggaaacccgcagcatcgtggca
aaacctgccgcctaa
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