Pectobacterium brasiliense: B5S52_10270
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Entry
B5S52_10270 CDS
T06364
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pbra
Pectobacterium brasiliense
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbra03019
]
B5S52_10270
Enzymes [BR:
pbra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B5S52_10270
Messenger RNA biogenesis [BR:
pbra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B5S52_10270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
T2SSE
nSTAND3
NACHT
PhoH
Zeta_toxin
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ARA76238
LinkDB
All DBs
Position
2241660..2245547
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLSALSTQLSELMLRDRQRLRRRLQGAAKVSSPQAQAAIAQEIEGEIAAARQKVENR
RASCPAIHYPEQLPVSQKKDEILEALRHHQVIIVAGETGSGKTTQLPKICLELGRGVHGL
IGHTQPRRLAARTVADRIAAELETPLGGSVGYKVRFNDQVSDNTLVKLMTDGILLAEIRQ
DRLLMQYDTLIIDEAHERSLNIDFIMGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVDVRYRPVVEDADDSDRDQLQAIFDAVDELTREGPGDILVFMSGEREIR
DTAEALTRLDLPHTEILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVAAGVCIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAINLAENGHYR
LTPQGQQLAQLPIDPRLARMVLEARKTGCVREVMIITAALSIQDPRERPVDKKQASDEKH
RRFADKDSDFLAFVNLWDYLRDQQKALSSSQFRRQCRTDFLNYLRVREWQDIYTQLRQVV
KELGLPVNSEPADYLSIHCALLTGLLSHIGQKDIEKQEFSGARNARFAIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLIKRSYSDPHWEKAQGTVMAQEKVTLF
GLPIVAARKVNYSQIDPTLAREMFIRHALVEGDWQTHHAFFRANLKLLAEVEDLEHKSRR
RDILVDDETLFAFYDQRLPHDVVSSRHFDTWWKAASRDNADLLNFEKSMLIKDGAEKVSA
LDYPNFWHQGSLKLRLSYQFEPGADADGVTVHIPLPILNQVREEGFEWQIPGVRRELTIA
LIKSLPKPLRRNFVPAPNYAEAFLARTTPLEKGLLDALERELRLMTGVTVPREAWQWDQV
PDHLKITFRVIDEKKRTQREGKDLNALKDQLKDKVQQTLSSVVDDGLEQRGLHVWSFGSL
PDCYEQKRGGYSVKAYPALVDEKDSVAIRLFDTPHQQQQVMRQGLRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCIACAVDKLIESSGGPVWQEEAFQQLHEKVRAEL
NDTVVDIARQVEQILTAVFTINKRLKGRVDMAMALALSDIKSQMNGLVFRGFVTENGWQR
LPDVLRYLQAIERRLEKLAQDVHRDRAQMLKVEHVQQAWQQWWNKLPAERRDDDDVKAVR
WMLEELRVSYFAQQLGTPFPISDKRVLQAMEQVEG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcacctctcagtgcattatctacgcagttaagtgagctaatgcttcgcgatcgg
caacgtctgcgccgccgtttacagggcgcggcgaaggtcagcagcccgcaggctcaggcg
gcgatcgctcaggaaattgagggggaaatcgctgccgcacgccagaaagtcgagaaccgg
cgggcaagctgtccggcgattcactaccctgaacagctccctgttagccagaaaaaagac
gagatactggaggcgctgcgtcatcatcaggtgattatcgtcgcgggtgagacagggtcg
ggtaagaccacgcagttgccgaaaatttgtctcgaactggggcgcggcgtgcacggtttg
atcggccacacgcagccgcgccgtctggcagccagaaccgttgctgaccgcattgctgcc
gagctggaaacgccgctgggtggcagcgtagggtataaagtccggtttaacgatcaggtg
agtgacaatacgctggtcaaactgatgaccgacggtattctgctggcggaaattcggcag
gaccgcctgttgatgcagtacgacacgctaatcatcgatgaagcgcacgagcgcagcctg
aatatcgatttcatcatgggctatttgcgccagctgttgccaaagcgccctgatttaaaa
gtgattattacgtcggcaaccatcgatccacagcgcttctcccgccactttaataacgca
ccgatcattgaagtgtccggccggacctatccggtggacgtgcgctatcgtcccgtggtg
gaagacgctgatgacagcgatcgcgatcagctacaggcgatttttgatgcggtcgatgaa
ctgacgcgcgaagggccgggggatattctggtcttcatgagcggtgaacgtgaaattcgc
gatacggcagaggcgctgactcgtctggacttgccgcatactgaaatcctcccgctgtac
gcccgcctgtcgaatcaggaacagaaccgcgtctttcagtcacatcacggtcgccgcata
gtactggcaaccaacgtagcggaaacctcgctcaccgtgccggggattcgctatgtcatc
gatccgggcaccgcacgcatcagccgctacagtttccgcaccaaggtacagcgcctgccg
attgagcctgtctctcaggcgtcggcgaatcagcgtaaaggacgctgtggccgtgtcgcc
gctggggtgtgtattcgtctctattccgaacaggatttcctgtcacggcctgaatttacc
gatcctgaaattcttcgcaccaatctggcttccgttattctgcaaatgacgtcgctgggg
ctaggcgatatcgccgcattcccgtttgttgaagcgccggataaacgcaacattcaggac
ggtgtgcggctgctggaggaattaggtgcgattaatctggcggagaacgggcattaccgc
ctgacgccgcaggggcaacagctggcgcagttaccgatcgatccgcgtttggcgcgaatg
gtgctggaagcgcgtaaaactggctgtgtgcgtgaagtgatgatcatcaccgctgcgctg
tcgattcaggatccgcgcgaaaggccggtggataagaaacaggcctcggatgagaaacac
cgccgtttcgccgataaagactccgattttctggctttcgtcaatctgtgggattacttg
cgtgaccagcaaaaggcgctgtcttccagccagttccgccgccagtgccgcaccgatttc
cttaactacctgcgcgtgcgcgaatggcaggatatctacacgcaactgcgtcaggtagtg
aaagagctgggactgccggtcaatagcgaaccagccgattacctgagtattcactgcgcg
ctgctcaccggcttgttgtcgcatatcgggcagaaagatattgagaaacaggagttcagt
ggtgcgcgtaacgcgcggtttgcgattttcccaggctccgggttattcaaaaagccacct
aagtggacgatggtggcggaactggtggaaaccagccgtctgtggggacgcattgccgcg
cgtattgaacccgagtggatcgagccgctggcccagcacctgattaaacggagctacagc
gatcctcattgggagaaagcgcagggcacggtgatggcgcaggagaaggtgacgctcttc
gggctgccgattgtcgcggcgcgtaaggtgaactacagccaaatcgatccgacgctggcg
cgtgaaatgttcatccgccacgcgctggtggaaggcgactggcaaacgcaccacgccttt
ttccgcgccaacctcaaattgctggcggaagtggaagatctcgaacataaatcgcgccgc
cgcgacattctggtggatgacgaaacgctgtttgctttctatgaccagcggttgccgcac
gatgtggtgtcgtcgcgccattttgacacatggtggaaagccgctagccgggataatgcc
gacctgcttaattttgaaaagagcatgttgattaaagacggcgcggagaaggtaagtgcg
ctggattatccgaacttctggcatcagggcagcctgaaattacgcttgtcttatcagttt
gaaccgggtgcggacgccgatggtgttacggttcatattccgctgcctattctcaatcag
gtgcgtgaagagggcttcgagtggcagattcccggcgtgcgccgtgaactgacaattgcg
ctgattaagtcattgcctaagccgttacgtcgtaacttcgtacccgcgccgaactatgcc
gaagcgtttctggcccgtaccacgccattagagaaaggactcttggatgcgctggaacgt
gagttgaggctgatgacgggcgtcacggtgccacgcgaggcgtggcagtgggatcaggtg
cccgatcatctgaaaatcacgttccgcgttattgatgagaagaagcggacgcagcgcgaa
ggcaaagacctgaatgcgctgaaagatcagctcaaggataaagtacagcaaacgctgtca
tctgtagtggatgacgggctggagcagcgcggtctgcacgtctggagcttcggttcgttg
ccggactgctatgagcagaagcgtggcggctactcggttaaagcctatccggcgttggtg
gatgaaaaggatagtgtggcgattcgcctgttcgacacgccgcaccagcaacagcaggtg
atgcggcaggggctgcgccgtctgttattgctgaacattccatcgccgattaaatatctg
catgaaaagctgccgaacaaggcgaaactcggtctttatttcaatccgtacggcaaagta
ttggatcttatcgatgactgtatcgcctgcgcggtggataagctgattgaatcatccggt
ggtcccgtctggcaggaagaggccttccagcaactgcatgaaaaagtgcgtgcggagctg
aacgacacagtggttgatatcgccaggcaggttgagcaaatcctgacggcggtcttcacc
attaacaagcgtctgaaagggcgtgtagatatggcgatggcgctggcgttaagcgatatc
aagagccagatgaatgggctggtgttccgtggctttgtgaccgaaaacggctggcagcgt
ctgccggacgtgctgcgttatctgcaagcgatagagcgccgtctggagaaactggcgcag
gatgttcaccgcgaccgggcgcagatgctgaaagtggagcacgttcaacaggcgtggcag
cagtggtggaataagctgcctgcggagcgacgtgacgacgacgatgtgaaagcggtgcgc
tggatgcttgaagagctgcgcgtcagctactttgcccagcagctaggaacgccgttcccg
atctcggataagcgcgtattgcaggcgatggagcaggtcgaaggataa
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