Pectobacterium brasiliense: B5S52_12790
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Entry
B5S52_12790 CDS
T06364
Name
(GenBank) L,D-transpeptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
pbra
Pectobacterium brasiliense
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pbra01002
]
B5S52_12790
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pbra01011
]
B5S52_12790
Peptidases and inhibitors [BR:
pbra01002
]
Cysteine peptidases
Family C82
B5S52_12790
Peptidoglycan biosynthesis and degradation proteins [BR:
pbra01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
B5S52_12790
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
ARA76709
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All DBs
Position
complement(2823844..2825580)
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AA seq
578 aa
AA seq
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MLLLHKRKMVRLLLRVGCIWVGSLSPSFSVLAASPTVVSGLSQSSGVVSVENSRAGLLAA
LPHGMTLHYLSDLSSLYAQHQMQPMWADNRAVQQFQQQLAELAIAGVQPQFTTWVTWLTD
PQLTGFARDAVLSDAMLGYLQFVSGVERSGNDWLYSSVPYRLQSPALNVVSQWQQAVKSG
TSSAYVLSLTPQHSQYAKMHEALKTMLTDNRPWPSLNLVESLRPEQQSRELAVLREILQR
TGMLSSTESITLFNENTAATTVSTGHAPLVEGGAIDDRYTGELVDAVKRFQHWQGLEDDG
VIGKRTRDWLNVSPQMRATLLALNIQRLRLLPDNVHTGIMVNIPNYSLIYYQDGAERLSS
RVIVGQPKRKTPLMSSSLYNVVVNPPWNVPTTLTRQDIIPKVVRDPGYLQRHGYTVLSGW
SQDAEAIDPSMIDWPMVSAERFPYRLRQAPGANNSLGRYKFNMPNSEAIYLHDTPNHNLF
QRDIRALSSGCVRVNKASELASMLLQDAGWNNSRISSTLDQGNTTFVSMKHRIPVNLYYL
TAWVAEDGRPQFRTDIYNYDDTARAGTKVLSRAGLLLQ
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgttacataaacgaaaaatggtcaggctgctgttacgcgtgggttgtatttgg
gtcggaagcctgtctccttcgttttcggtgctggcagcatctccgacggtggtatccggc
ttatcgcaaagctcgggcgtggtgtctgtagaaaatagccgtgcagggcttctggccgcg
ctgccgcacggtatgacgttacattatctctctgatttatcatcgctttatgcccaacat
cagatgcaacctatgtgggcagataaccgtgcggttcaacagtttcaacaacagctggct
gaattggcgatagctggcgtacaaccgcagttcactacgtgggtaacctggctgaccgat
ccgcaattgaccggatttgcgcgcgatgccgtgctctcggatgcgatgctgggctatttg
cagttcgtttcgggtgtagaacgtagcggtaatgactggttgtacagcagcgtaccttac
cgtctgcaatcgccggcgctcaatgtcgtttcgcaatggcaacaggccgtgaaatctggc
accagctcggcctatgtgctttcgctgacaccacagcattcgcaatacgccaaaatgcat
gaagcattgaagacgatgctgacggacaatcgcccgtggccgagtctgaatctggtggag
tctctgcgcccggaacagcagagtcgggaactggcggtactgcgtgaaattctgcaacgt
actggcatgctgtcttcaacggagagcattacgctgtttaacgaaaataccgctgcgacg
acagtatcgacagggcatgctccgctggtcgagggcggtgctatcgacgatcgttatact
ggcgaactggttgacgcggttaaacgcttccagcactggcaagggctggaggatgatggc
gttattggtaagcgtacgcgcgattggctcaatgtgtccccgcaaatgcgcgcaacgctg
ctggcgctgaatatccaacgtctgcgcctgttaccggataacgttcacaccggtatcatg
gtgaacatccccaattattcactgatctattatcaggatggcgctgaacgcttgtcatca
cgcgtcattgtggggcagcctaaacgcaagacgccattgatgagcagctcgttgtataat
gtggtggtcaatccgccgtggaatgttcctacgacgctgactcggcaggacatcattcct
aaagtcgtacgcgaccccggctatctacagcgtcatggctacacggtgttgtccggttgg
agtcaggatgctgaagcgatcgatccttccatgatcgattggccgatggtgtcagcagag
cgcttcccttatcgactgcgtcaggccccaggtgcgaataactcgttgggccgctataaa
tttaatatgccgaattcagaagcgatttatctgcacgacacgcctaatcacaatctgttc
cagcgtgatatccgggcgctgagctccggctgcgtgcgggttaataaagcatcggaactg
gctagcatgttattgcaggatgcgggatggaataatagtcgtatttcttccacgctggat
cagggaaataccacctttgtgtcaatgaaacatcggattccggtcaacctctattacctg
accgcgtgggtggctgaagacggtagaccgcagttccgaacagatatttacaattatgat
gacaccgctcgtgcagggacgaaagtgctgtccagagcagggctgttgcttcagtaa
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