Pectobacterium brasiliense: B5S52_16960
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Entry
B5S52_16960 CDS
T06364
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pbra
Pectobacterium brasiliense
Pathway
pbra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
B5S52_16960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbra03400
]
B5S52_16960
Enzymes [BR:
pbra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
B5S52_16960
DNA repair and recombination proteins [BR:
pbra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
B5S52_16960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
Herpes_Helicase
DEAD
PhoH
MukB
AAA_28
UvrD_C
T2SSE
FtsK_SpoIIIE
CbiA
AAA
DUF87
AAA_17
SRP54
Flavi_DEAD
TrwB_AAD_bind
ResIII
ATPase
NTPase_1
AAA_24
Motif
Other DBs
NCBI-ProteinID:
ARA77483
LinkDB
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Position
complement(3795781..3797640)
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AA seq
619 aa
AA seq
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MIALLETALARRLLRPLDVQFARMLADETKPDLLLAAACLSAHSGAGHVCLPLENLQAQT
LFDGREPELAQQLLTEAGLNTVAAWRQRLLASDAVSDGSQPTPLVLQGEKLYLQRSWQSE
GRVARFIASERDTIPVDEPAIRAVLDRLFPDVGEEVNWQKVAAAVALTRRIAVISGGPGT
GKTTTVAKLLAALIELNTGETLRIQLAAPTGKAAARLTESLGQALHRLAVDPLLRDAFPQ
EATTLHRLLGAVTDSQRLRHHHDNPLHLDVLIVDEASMVDLPMMANVIAALPPHARIIFL
GDRDQLASVEAGAVLGDICRFAEAGYSRARAQQLQRLTGCKLDERGPEGQTTVSDSICLL
RRSYRFDPHSGIGQLALAVNSGDDARVRAVLNGEFADITCSPLTEAEEYQAMLAQCVEGY
RDYLQLVAAGATPDAVLLAFQRYRQLCALREGPFGVAGLNQRIEQALHQARLIQRSRNPL
NRWYPGRPVMIERNDAALGLFNGDIGIAMTGDNGELRVFFPLPNGETKDVTPSRLPPHET
AYAMTVHKSQGSEFDHTALVLPNHYLPVLTRELVYTAITRARQRLSLYTDVRILCRAVKT
PTQRYSGLEERISALMARP
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgattgcgttacttgaaacggcactggcgcggcggttactgcgcccgctggatgttcag
ttcgccagaatgctggcggatgagacaaagcccgatctgctgttggccgccgcctgcctg
agtgcacattcgggcgcggggcacgtgtgtttgccgctggagaacttgcaggcgcagacg
ctgtttgacggccgcgagcctgagctggcccaacagctgctcacggaggcagggctaaac
acggttgccgcatggcggcagcgcttactggcgtccgatgccgtcagcgacggaagccag
ccgacgccgctggtgctgcaaggagaaaagctgtacttacagcgtagctggcagagtgaa
ggccgcgtggcgcggtttatcgccagcgagcgcgatacgatccccgttgatgaacccgcg
atccgagcggttctggatcggctgtttcctgacgtgggcgaagaggttaactggcagaag
gtcgctgcggctgtcgccttgacgcgccgcattgcggtgatttccggcgggccggggacg
gggaaaaccacgacggtggccaaattgctggcggcgctaattgagctgaatacgggagaa
acgttacgtattcaactggctgcgccgaccgggaaagcggctgcgcggctcacggagtcg
ctggggcaggctctgcaccgtcttgcggtggatcctttgttgcgggatgcatttccgcag
gaagcgacaaccctgcaccggcttttgggggcggtgacagacagccagcgcctgcgtcat
catcacgacaacccgctacatttggatgtgctgattgtggatgaggcgtcgatggtcgat
ctgccgatgatggcaaacgtgatcgccgcgcttccgccacacgccagaattatctttctg
ggtgaccgcgatcagttggcgtccgttgaggcgggtgcggtgttgggcgatatctgtcgt
tttgccgaggctggctatagccgtgcacgggcgcagcaattgcagcggctgacgggctgt
aagctggatgaacgtggtcctgaagggcaaacgacagtcagtgacagtatttgtctgtta
cgccggagctaccgtttcgatccgcattccgggattgggcaactggcgctggcggtgaac
agcggtgatgatgctcgtgtgcgtgcggtgttaaacggcgagtttgccgacattacctgt
agcccgttaaccgaggctgaagagtatcaggccatgctggcacagtgcgtcgaagggtat
cgtgattatctacagcttgtggcggcgggagccacgccggacgctgtgctgcttgccttc
cagcgctatcgtcagttgtgcgcattgcgcgaagggccatttggcgtagcagggctgaat
cagcgcatcgagcaggctttgcatcaggctaggctgattcagcgtagccgtaatccgctt
aaccgctggtatcccggccgaccggtcatgattgaacgtaacgatgccgcattaggcctg
ttcaatggggatatcggtattgccatgactggagacaacggggaactgcgcgtatttttc
ccgttgccaaatggcgaaaccaaagacgttacgccaagccgtctgccgccgcatgaaacg
gcctatgcgatgacagtgcataaatcgcagggatcggagtttgatcatacggcgctggtg
ctgccgaaccactatttaccggtgctgacgcgggaactggtgtataccgccatcacgcgt
gcgcgccagcgtttgtcactctataccgatgttcgcattctctgccgcgcggtgaaaacg
ccaacgcagcgctatagcggcctggaagagagaattagcgcgttaatggcacgtccttga
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