Pectobacterium brasiliense: B5S52_18325
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Entry
B5S52_18325 CDS
T06364
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pbra
Pectobacterium brasiliense
Pathway
pbra03410
Base excision repair
pbra03430
Mismatch repair
pbra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B5S52_18325
03430 Mismatch repair
B5S52_18325
03440 Homologous recombination
B5S52_18325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbra03400
]
B5S52_18325
DNA repair and recombination proteins [BR:
pbra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
B5S52_18325
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
B5S52_18325
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B5S52_18325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ARA77729
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All DBs
Position
complement(4116499..4118253)
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AA seq
584 aa
AA seq
DB search
MITQLRRRPLVEDIDLPDTVPPLLRRLYAQRGVKGAQELERSLSGLLNYRLLSGIDKAID
LLQQALAEKRCIVIVGDFDADGATSTALTVLALRSMGGVNVKYLVPNRFENGYGLSPEVV
AQAAALGAEVIVTVDNGISSHAGVEDAHRRGIAVLVTDHHLPGEILPDADAMINPNLPDC
QFPSKALAGVGVAFYLMMALFVRLRDSNWFTQPMFTQQRLAKPNLTELLDLVALGTVADV
VPLDANNRILVAQGLNRIRAGECRPGIRALLEVANRDASQLVASDLGFALGPRLNAAGRL
DDMTVGVELLLSDDITQARMLANDLDALNQDRREIEQGMQVEALRLCESLERTRTELPYG
LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGMLKGSGRSISGLHLRDALERLDT
LYPGMMDKFGGHAMAAGLSLHEDRFEDFRQRFGELVGEWLDPSQLEGVVWSDGELMLPEL
DLLSTAEMLRYAGPWGQAFPEPTFDGCFRILQPRLLKERHLKAMFEPIGATGQVPLLDGI
AFNIDTTIWPDPSIKEVEMVYRLDINEFRGKRSVQLMIQHLWPR
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgattacccaactccgccggcgtccgttggtggaggacattgatttacctgacaccgtt
ccgcctttgctgcgtcgcctttatgcgcagcgcggcgtgaaaggtgcgcaagagctggaa
cgtagcctgagtggtttactcaattaccgtttgctcagcggcattgataaagcgattgac
ctgcttcaacaggcgctagctgaaaagcgctgcatcgtcatcgttggtgactttgatgct
gatggtgccaccagcacggcgctcaccgtattagcgctgcgcagtatgggcggcgtgaac
gtgaaatatctggtgccgaaccgttttgaaaacggctacgggctaagcccagaagtggtg
gcgcaggctgccgcgctgggtgctgaagtaattgtgaccgtggataacgggatctcttct
cacgcgggtgtcgaggatgcgcaccggcgtggtatcgcggtgctggtgaccgatcaccac
ctgccgggcgaaatattgcctgatgccgacgcgatgattaaccccaatttgcctgactgc
cagtttccctccaaggcgctggctggcgtaggcgtcgcgttttacctgatgatggcactg
ttcgtgcgcctgcgtgatagcaactggtttacgcaacccatgtttacgcaacagaggctg
gcgaagccgaatctcaccgaattactggatctggtcgcgctgggcacggtggctgacgtg
gtgccgctggatgccaataaccgcattctggtcgctcaggggctgaaccgcattcgtgcg
ggcgaatgtcgtccgggcattcgggcgctgttggaagtggcgaaccgtgatgccagccaa
ctggtcgccagcgatttaggctttgcgttaggcccacggctgaatgccgccggacggctg
gatgatatgacggtcggcgttgagctgttattgagtgacgatattactcaggcgcgcatg
ctggctaatgatttagatgcgttgaatcaggatcgtcgggagatcgaacaggggatgcag
gtcgaagccttgcgcctgtgcgaatcgctggagcgcacccgtactgagttgccttatggg
ctggcgatgtatcatccagagtggcatcagggcgttgtcggcattttggcatcgcgtatc
aaagagcgttttcatcgtccggtgattgcctttgcacccgcgggcgacggtatgctgaaa
gggtcagggcgttccatttccggcctgcatctgcgtgatgcgctggagcggctggatacg
ctgtatcccggcatgatggataagtttggcggacacgcgatggcggcagggctatcgctg
catgaagatcggtttgaggattttcgtcagcgcttcggcgaattggttggcgaatggctc
gacccgtctcagcttgaaggcgtcgtctggtctgatggcgaactgatgctgccggaactg
gatctgctctcaacggcagaaatgctgcgctacgcggggccgtgggggcaggcgttcccc
gaaccgacgttcgatggctgcttccgcattctgcaaccccgcctacttaaagagcgccat
ttgaaagcgatgtttgaaccgatcggtgcaacagggcaggtgccgctgctagacggtatc
gcgttcaatatcgataccaccatctggccagatcccagtattaaagaagtggaaatggtg
taccggctggatattaacgagtttcgcggtaaacgctcggtgcaattgatgatccaacac
ctgtggccgcgctga
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