Pectobacterium brasiliense: B5S52_18645
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Entry
B5S52_18645 CDS
T06364
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbra
Pectobacterium brasiliense
Pathway
pbra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B5S52_18645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbra03019
]
B5S52_18645
03009 Ribosome biogenesis [BR:
pbra03009
]
B5S52_18645
Enzymes [BR:
pbra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B5S52_18645
Messenger RNA biogenesis [BR:
pbra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B5S52_18645
Ribosome biogenesis [BR:
pbra03009
]
Prokaryotic type
rRNA helicases
B5S52_18645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
ARA77790
UniProt:
A0A433NIV8
LinkDB
All DBs
Position
complement(4178819..4180717)
Genome browser
AA seq
632 aa
AA seq
DB search
MTDLVTSFADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNLKPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDVET
LAAALLKMAQGERPLILPPDPVFRPRREFRDRDESRSDSRGDRRRDPRDSRDSRDGDRPQ
RRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG
MPGDLLSHFTRTRILNKPMNMQLMGDAVAQPERRGGGRPGGERRDGAAPRRSFGGGERRE
GNGNGGERRERSFNRDNRDGASRAPRRRPADA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttagtaacttcttttgccgatttggggctgaacacctctatccttaatgcc
ctgactgatttgggctatgaaaaaccgtctccgattcaggcggaatgtattcctcacctg
ctgaacggtcgcgatgtgctgggtatggcacagaccggtagcggtaaaacagcagcgttc
tctctgccattactgaacaatctgaaacctgaacttaaagcaccacagattctggtgctg
gcaccgacccgcgagctggcggtgcaggtagcagaggcctgcaatgatttctccaaacat
atgcacggcgtgaacgtcgtcgcactgtacggcggccagcgctatgacgtgcaactgcgc
gctttgcgtggtggtgcacagatcgttgtgggtacgccgggccgtctgctggatcacctg
aaacgcggtacgctggatctgtccaacctgagtggtttggtgctggacgaagctgatgaa
atgctgcgtatgggcttcattgaagatgttgaaaacatcatggctcagatccctgctgaa
catcagactgcgctgttctctgcgacgatgcctgaagcgattcgccgcattacgcgccgt
ttcatgaaagatccacaagaagttcgcattcaatcaagcattactacgcgcccagacatc
agccagagctactggacggtgcagggtatgcgtaaaaatgaagcgctggtacgtttcctg
gaagcggaagattttgatgcggcgattattttcgttcgtaccaaaaacgcgacgctggaa
gtggccgaagccctggagcgtagcggttacaacagcgccgcgctgaacggtgacatgaat
caggcgctgcgtgagcaaacgctggagcgtctgaaagatggtcgtctggatatcctgatc
gcgaccgacgttgcggcgcgtggtttggacgttgagcgtatcagcctggtagtgaactac
gatatcccgatggatgccgagtcttacgtccaccgtattggtcgtaccggtcgtgcaggt
cgtgcgggccgcgctctgctgttcgtcgaaaaccgtgaacgtcgcctgctgcgcaacgtt
gaacgcacaatgaaactgaccattcctgaagtggaattgccaaatgcagaattgctgggt
caacgccgtctggctaaattcgccgctaaagtacagcaacagctggaaagcagcgatctg
gacatgtaccgtgcactgctgacaaaactgcaaccgcaggaagagctggatgtcgaaacg
ctggctgctgcgctgctgaaaatggcgcagggcgaacgccctctgattctgccgccagat
ccggtattccgtcctcgtcgcgaattccgcgatcgtgatgagtctcgcagtgattcacgt
ggcgatcgtcgtcgtgatcctcgcgattctcgtgacagccgtgacggtgaccgtccacaa
cgtcgtgagcgtcgtgatgctggcgagatggaattgtatcgcattgaagtgggtcgtgat
gacggcgttgaagttcgccacattgttggtgccatcgccaacgaaggtgatatcagcagc
cgctacatcggtaacatcaagctgttcgcgtctcactcgacgattgaactgccgaaaggt
atgccgggcgacctgttatcacatttcacccgtacgcgtattctgaacaaaccaatgaat
atgcagttgatgggtgatgcagttgcacagccagaacgtcgtggcggtggtcgtcctggt
ggcgagcgtcgtgatggcgcagcaccacgtcgctctttcggcggtggtgaacgccgtgaa
ggtaacggtaacggcggtgagcgtcgcgagcgttctttcaaccgtgataaccgtgacggc
gcttcacgcgctccacgtcgtcgtcctgctgacgcataa
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