Pectobacterium brasiliense: B5S52_18655
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Entry
B5S52_18655 CDS
T06364
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pbra
Pectobacterium brasiliense
Pathway
pbra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B5S52_18655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbra03019
]
B5S52_18655
03016 Transfer RNA biogenesis [BR:
pbra03016
]
B5S52_18655
Enzymes [BR:
pbra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
B5S52_18655
Messenger RNA biogenesis [BR:
pbra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
B5S52_18655
Transfer RNA biogenesis [BR:
pbra03016
]
Prokaryotic type
tRNA degradation factors
B5S52_18655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH_2
S1_2
OB_RRP5_4th
aRib
KH-I_KHDC4-BBP
DUF4172
KH_SLS1_2
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
ARA77792
LinkDB
All DBs
Position
complement(4181917..4184037)
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AA seq
706 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT
VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV
NPQVSPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTMDELKESRLDLVVA
GTEGAVLMVESEADILSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKWEWHAPEVNV
SLEQRVQALSEARLGDAYRITEKQERYAQVDVIKADVVAALQAEDETLNAGDIQEILGNV
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQNIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATTQTQEAAAPSSEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgatcgtccgtaagttccaatatggtcagcataccgtcacgttagagacc
ggtatgatggcacgccaggctaccgccgctgtgatggtaagcatggatgacaccgcagta
ttcgttactgtggtcggcgcgaaaaacgccaaacccggccaaagtttcttcccattaacg
gttaactatcaggagcgtacttacgctgctgggcgtttccctggtggttttttccgtcgt
gaaggccgtccaagcgaaggcgaaacgctgatttctcgcttgatcgaccgcccaatccgc
cctctgttcccagaaggtttcctgaatgaagttcaggtgattgcgaccgtcgtttctgtt
aacccacaggttagccctgacatcgttgccatgattggtgcctctgcggcgttgagcctg
tctggtattccattcagcggccctatcggcgctgcgcgcgtcggttacctgaacgatcag
tatgtcctgaacccaacgatggatgagctgaaagaaagccgtctggatctggtggttgca
ggtacggaaggcgcggttctgatggtggaatccgaagccgacattctgagtgaagatcag
atgctgggtgctgtggtgtttggccacgagcaacagcagatcgttatccagaacatcaac
gctctggttgctgaagcaggcaaaccgaagtgggaatggcatgcgccagaagttaacgtt
tctttagagcagcgtgtacaggctttgtctgaagcacgtctgggtgacgcttaccgcatc
actgaaaaacaagagcgttatgcacaggttgacgtcatcaaagctgatgttgttgccgct
ctgcaagccgaagacgaaacgctgaatgcgggcgatatccaggaaattctgggtaacgtt
gagaaaaatgtcgtacgtagccgcgtgctggctggcgaaccgcgtatcgatggccgtgaa
aaagacatgattcgtggtctggatgtgcgtactggcgtgctgccgcgtacccacggttct
gcactgttcacccgtggtgaaacgcaggcgttggtcaccgcaacgttggggactgagcgt
gacgcgcagaatattgacgaactgaccggtgaacgtaccgatcgcttcctgctgcactac
aacttccctccgtactctgtcggtgaaaccggtatggtcggttcgcctaagcgtcgtgag
atcggtcacggtcgtctggctaagcgtggcgtgttggcagttatgccgaaggcgaacgaa
ttcccgtacaccgtgcgtgtggtgtctgaaatcacggaatccaacggttcttcttccatg
gcgtctgtctgtggtgcttctctggcactgatggatgcgggcgtgccaatcaaatcagcc
gttgcgggtatcgcgatgggtctggttaaagaaggcgacaattttgttgttctgtctgac
attctgggtgacgaagaccacctgggcgatatggacttcaaagttgctggtagccgtgaa
ggtatcaccgcgctgcagatggatatcaagatcgaagggattacccgtgagatcatgcag
gttgctttgaatcaggccaaaggtgcacgtttgcacattctgggcgtgatggagcaggcg
atcagcacaccacgtggcgatatttctgaattcgcaccgcgtattcacaccatcaagatc
agtaccgataagattaaagatgtgatcggtaaaggtggttctgtgattcgtgcgctgacg
gaagaaacaggcacgactattgaaattgaagacgatggtactgtgaagatcgcttcaact
gacggcgaaaaagcgaaacacgcgattcgtcgtattgaagagatcactgccgaaatcgaa
gtcggccgcgtgtatcagggtaaagttacccgcatcgttgattttggtgctttcgtcgct
attggcggcgggaaagaaggcctggtgcatatttctcagatcgccgataagcgcgtagag
aaagtgactgactacctgcaaatgggtcaggaagtgccggtcaaggttctggaagttgat
cgccagggtcgcgtgcgcttaagcatcaaagaagcaactacgcaaactcaggaagcggca
gccccgtcttctgaggaataa
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