Pectobacterium brasiliense: B5S52_18840
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Entry
B5S52_18840 CDS
T06364
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pbra
Pectobacterium brasiliense
Pathway
pbra02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
B5S52_18840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbra03021
]
B5S52_18840
Transcription machinery [BR:
pbra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B5S52_18840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Sas-6-like_oligomerization
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
ARA77820
UniProt:
A0A086ENN9
LinkDB
All DBs
Position
4216256..4218091
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AA seq
611 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTNDADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTA
THVGSELSSEEMDDDDEEEDDEEEEDDNSIDPELAREKFTELREQYETTRQVIKAHGRSH
ALAAQEILNLSEVFKQFRLVPKQFDFLVNSMRSMMDRVRTQERLIIKLCVEQCKMPKKNF
VTMFTGNETNNTWFAAAVAMGKPWSEKLNDVEEDVTRSLQKLQQIEEETGLTIEQVKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRS
ATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEVLRSFLDD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctgcttgtcacccgtggtaaggagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcatcgactcggatcag
atcgaagatatcatccagatgattaacgacatgggcatccaggtgatggaagaggcaccg
gatgcagacgatctgttgctggccgaaaacaccaatgatgccgatgaagatgcggcagag
gctgctgcgcaggttctatccagtgttgaatcggaaattggtcgcaccaccgacccggtt
cgcatgtacatgcgtgaaatgggtaccgttgaactgttgacgcgcgaaggcgagatcgat
atcgccaagcgtattgaagacggtatcaaccaggttcagtgctctgttgcggagtatcct
gaagccattacttacctgctggaacagtatgaccgcgtcgaagcgggcgaaagccgcctg
tccgacctgattacgggcttcgtcgatcctaatgcggaagaggacattgcacctaccgcg
actcacgttggttctgagctttcgagcgaagaaatggacgatgatgacgaggaagaagac
gacgaggaagaagaagacgacaacagcatcgatcctgagctggcgcgtgagaagttcacc
gagctgcgtgagcaatatgaaacgacccgtcaggttatcaaagcccacgggcgtagccat
gcgctggcagcacaggaaatcctgaatctgtccgaagtcttcaaacagttccgtctggtg
ccaaaacagtttgatttcctggttaacagcatgcgttccatgatggatcgcgttcgtact
caggaacgtttgatcattaagctgtgtgttgaacagtgcaaaatgccgaagaaaaacttc
gtcacgatgttcactggcaatgaaaccaacaacacctggtttgccgcagcagtcgccatg
ggcaagccatggtctgaaaagctgaatgatgttgaagaagacgtcacccgcagcctgcaa
aaactgcagcagatcgaagaagaaactggcctgacgatcgagcaggttaaagacatcaac
cgccgtatgtcgattggtgaagcgaaagcgcgtcgtgccaagaaagaaatggtggaagct
aacctgcgtctggttatttctatcgcgaagaaatacaccaaccgtggtttgcagttcctc
gacctgattcaggaaggtaacatcggtctgatgaaagcggtagataagtttgaatatcgc
cgtggctacaaattctcgacctatgcgacctggtggatccgtcaggcgatcacccgttct
atcgccgatcaggcgcgtaccatccgtattccggtacacatgattgagacgatcaacaaa
ctgaaccgtatctctcgtcagatgttgcaggaaatgggtcgtgagccgacgccggaagag
ctggctgagcgtatgctgatgccggaagacaaaatccgtaaagtgctgaaaatcgcgaaa
gagccgatttcaatggaaacccctattggtgatgatgaagattcacatttgggcgatttc
atcgaagatacgacgctggagctgccgctggattccgccacgtcggaaagcctgcgttct
gcgacacacgacgtactggctggcctgaccgcgcgtgaagcgaaagtcctgcgcatgcgt
ttcggtatcgatatgaacaccgaccatacgctggaagaagtgggcaaacagtttgacgtt
acgcgtgaacgtattcgtcagatcgaagcgaaagcactgcgtaaactgcgtcacccaagc
cgttccgaagtgctgcgtagcttcctggatgattaa
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