Pectobacterium brasiliense: B5S52_19605
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Entry
B5S52_19605 CDS
T06364
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pbra
Pectobacterium brasiliense
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pbra03016
]
B5S52_19605
Enzymes [BR:
pbra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
B5S52_19605
Transfer RNA biogenesis [BR:
pbra03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
B5S52_19605
Prokaryotic type
tRNA splicing ligases
B5S52_19605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ARA78590
LinkDB
All DBs
Position
complement(4378252..4379478)
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AA seq
408 aa
AA seq
DB search
MKTQDYDMMSPVNSAPVKMWTQGVPVEPEARDQLLNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTRGAIIPAAVGVDIGCGMIAVRTSLVASDLPDNLLGLRSAIEQAVPHGRSVTRS
KRDVGSWQNPPQTVDAHWSLLEPRFKRLTDKYPQLLKTNNYQHLGTLGTGNHFIEICLDE
VDRVWVMLHSGSRGVGNAIGSLFIKLAQEDMQQHIANLPDRNLAYFEEGSLHFDDYIEAV
EWAQDFARHNREVMMSHTLAALSRIVTKPFTTQQEGVNCHHNYVQRETHFGESVLITRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTAAKKRFTVEDQIRA
TAHVECRKDSDVIDEIPMAYKDIDKVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgcaggattacgacatgatgtcgcccgtgaatagcgcaccggtaaaaatgtgg
acgcagggcgtgcctgtggagccggaagctcgtgaccaactgctgaatacggccaaaatg
cctttcatttttaaacatctggcggtgatgccggatgtgcatctgggaaaaggatcgacg
attggtagcgtgatccccacgcgtggcgcgattatcccggcggcggtcggcgtggatatc
ggttgcggaatgattgcggtgcgtacgtcactggttgccagcgacttgccggataatctg
ctggggctacgtagcgcgattgaacaagcggtgccgcacggacgtagcgtaacgcgttcc
aagcgcgatgttggttcctggcagaacccgccgcagacggtggatgcgcactggtcactg
ctggaaccgcgttttaaacgtttgacggataaatatccgcaattgctgaaaacaaacaac
tatcagcatctggggacgttaggaacgggcaaccactttattgaaatctgcctggatgaa
gtggatcgcgtgtgggttatgttgcacagcgggtcacgtggtgtagggaacgcgattggg
tcgctgttcatcaagctggcgcaggaagatatgcagcagcacattgcgaatctgccggac
cgtaatctggcgtatttcgaggaaggtagcctgcactttgacgattatatcgaagcggtt
gagtgggcgcaggattttgctcgtcataaccgtgaagtgatgatgtcgcatacgttggcg
gcgctgtctcgaattgtgacaaagccgtttaccacccagcaggaaggtgtgaactgccac
cataactatgtgcagcgcgaaacgcactttggtgaatcggtgctgatcactcgtaaaggg
gcggtgtcggcgcagaaaggtcagatggggatcattccggggtcgatgggggcgaagagc
tttattgtacgtgggttggggaacgaagagagcttctgttcctgtagccacggtgcgggg
agaacgatgagccgtaccgccgcgaaaaaacgtttcaccgtagaagaccagattcgcgcg
accgcacacgtcgagtgcagaaaagacagcgacgttatcgatgaaatcccgatggcgtac
aaagatatcgataaggtgatggcggcacagtcatcgctggtggaaattgtgcacacgctg
cgtcaggtggtgtgtgtgaaaggataa
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