Pectobacterium brasiliense: B5S52_21130
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Entry
B5S52_21130 CDS
T06364
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pbra
Pectobacterium brasiliense
Pathway
pbra03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B5S52_21130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbra03400
]
B5S52_21130
Enzymes [BR:
pbra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
B5S52_21130
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
B5S52_21130
DNA repair and recombination proteins [BR:
pbra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
B5S52_21130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ARA78234
LinkDB
All DBs
Position
complement(4712618..4713427)
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AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGISPYLADHTILYAEVRNSRLRWPVSAEILSLSDEPVLSVRRRAKYLL
IELTRGWIIVHLGMSGSLRVLPEYSEPEKHDHVDLVMDSGKVLRYTDPRRFGAWLWTDNP
ETCSVLAHLGPEPLEAEFSADYLYQASRGKKTAIKQWIMDNKVVVGVGNIYASESLFAAG
IHPDRAAGSLNENDAAVLVGVIKQVLQLSIEQGGTTLRDFLQSDGKPGYFAQELRVYGRN
GEPCRTCGTLIETAKHGQRSTFFCRRCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaggttgaaaccagtcgtcggggaatttcaccgtatcttgccgat
cacaccatcctttatgctgaagtgaggaattcgcgcctgcgctggccggtatcggctgag
attctctcgctgagcgatgaaccggtgctcagtgtgcgtcggcgggcaaaatatctgctg
attgagctcactcgcggctggattattgtgcatctcggcatgtctggcagcctgcgggtg
ttgccggaatatagcgagccggagaaacacgatcatgttgatttggtgatggacagcggt
aaggtgctgcgttacaccgatccccggcgttttggtgcctggctgtggacggataatcct
gaaacttgttctgtattggcgcacttgggccctgagccgttagaggcggaattctctgcc
gattatctttatcaggcatcacgcggtaaaaagacggcaatcaaacaatggattatggat
aacaaagtcgtcgttggcgtaggcaatatttacgcgagcgaatcgctgtttgctgcgggt
atccatcctgacagagctgctggatcgctaaatgaaaatgacgcagccgtattggtgggc
gtgattaaacaggtgctacagctttcgattgagcaggggggcacaacgctgcgtgacttt
ttgcaatcagacggtaaacccggttatttcgcgcaggagctgcgagtctatggccgcaac
ggtgaaccttgtcggacatgcggaacattgatcgaaaccgcgaagcatgggcagcgcagc
acgtttttctgtcgtcgctgccagaagtag
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