Pseudomonas brenneri: QDY63_00640
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Entry
QDY63_00640 CDS
T10502
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pbre Pseudomonas brenneri
Pathway
pbre03420
Nucleotide excision repair
pbre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QDY63_00640 (uvrD)
03430 Mismatch repair
QDY63_00640 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbre03400
]
QDY63_00640 (uvrD)
Enzymes [BR:
pbre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QDY63_00640 (uvrD)
DNA repair and recombination proteins [BR:
pbre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QDY63_00640 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
QDY63_00640 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_22
AAA_11
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
WJM91462
LinkDB
All DBs
Position
139076..141259
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSIL
SVTFTNKAAAEMRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEAGLAQSFQILDSDD
QQRLVKRVIRELGLDEQRWPVRQAQWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYE
VACQRAGVIDFSELLLRALDLWRDNPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAK
GGDSLMVVGDDDQSIYGWRGAKIENIYQYSDDFPDAETIRLEQNYRSTAGILKAANALIA
NNTGRLGKELWTDGGEGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGI
GEKTVEAIREHARHSDVSMWEAMRLLIVNKGLTGRAAGALGGFVELIDNLAAKCLEMPLH
LMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARAFENSEEDADLSPLAAFLGHA
SLEAGDTQADEHEDSVQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGGQ
QQNSSNMFAGAEIPETPFSLGQLVKHAIFGEGVILNFEGAGAQARVQVNFAEGSKWLMMG
YAKLEAV
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctcccttttgctgaactccctcaacgatgcccaacgccaggccgta
gcagcccccgttggtcgtcagttggtcctggccggtgctggctccggtaaaacccgagtg
ctggtgcaccgtatcgcctggttgatccaggtcgagaacgcgtccccgcattccatcctg
tcggtgaccttcaccaacaaggccgctgccgagatgcgccaccgcatcgagcagttgatg
ggcatcagcccggccggcatgtgggtcggcaccttccacggcctggcgcaccgcttgttg
cgggcccactggcaggaagcaggcctggcccagagcttccagattcttgacagcgatgac
cagcaacgcctggtcaagcgggtgatccgcgagctgggcctggatgaacaacgctggccg
gtgcgccaggcccagtggttcatcaacggccagaaagacgaaggcctgcgcccgcaacat
atccaggccagcggtgacctgttcctggccaccatgcgcagcatttatgaagcctacgaa
gtggcctgccagcgtgccggcgtcatcgacttctccgaattgctgctgcgggccctcgac
ctgtggcgcgacaaccccggtttgctggcgcattaccagaagcgcttccggcacattctg
gtggacgagttccaggacaccaacgccgtgcagtacgcctggttgcgcctgctggccaag
ggcggcgacagcttgatggtggtgggcgacgacgaccagtcgatctacggctggcgcggc
gcgaaaatcgagaacatctaccagtattccgacgacttcccggacgccgagaccattcgc
ctggagcagaactatcgctccaccgccgggatcctcaaggccgccaacgccttgatcgcc
aataacaccgggcgcctgggcaaggaactgtggaccgacggcggcgaaggcgaggcgatc
aacctctacgcagccttcaacgaacacgacgaagcgcgctacgtggtggaaaccattgaa
agcgccctgaaaaccgggctggcccgcagcgacatcgccattctgtatcgctccaacgcc
caatcgcgggtgctggaagaagccttgctgcgcgaacgtatcccgtaccgcatctatggc
ggccagcgcttcttcgaacgtgcggaaatcaaaaacgccatggcctacctgcgcctgctg
gaaggtcgcggcaacgatgcggcgctggagagggtgatcaacgtaccggcgcggggtatt
ggcgagaaaaccgtcgaggcgatccgcgaacacgcgcgtcacagcgatgtgtcgatgtgg
gaggccatgcgcctgctgatcgtcaataaaggcctgacaggtcgcgctgccggggcgttg
ggtgggtttgtcgagttgatcgacaacctcgccgccaagtgcctggaaatgccgctgcac
ctgatgacccagaccgtgatcgaacagtccggcctgatcgcttaccacgaagcggaaaaa
ggcgagaaaggccaggcccgggtagaaaaccttgaggaactggtcagcgccgcccgggct
ttcgagaacagcgaggaagatgccgacctgtcgccattggcggcgttcctcggccacgca
tcgctggaagccggcgatacccaggccgacgagcacgaagacagcgtgcaattgatgacg
ctgcacagtgccaagggcctggaattcccctacgtgttcctggtgggcatggaagaaggc
ctgttcccgcacaagatgagcctggaagagcccggccgccttgaggaggaacgccgcctg
gcctacgtgggcatcacccgggccatgcagaacctggtgatgacctacgccgagacacgt
cgtctgtacggcagcgagacctacaacaaggtgtcgcgcttcgtacgagaagtgccgaaa
gggctgattcaggaagtgcgcttgtccaatagcgtcagccggccgtttggcggtggccag
cagcagaattccagcaacatgtttgccggtgcggaaattcccgaaaccccgttcagcctg
ggccagttggtcaagcatgcgatctttggcgagggtgtgatcctcaacttcgaaggcgcc
ggggcccaggcccgggtgcaggtgaacttcgccgaaggcagcaagtggctgatgatgggc
tacgccaagctcgaagcggtctaa
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