Pseudomonas brenneri: QDY63_04740
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Entry
QDY63_04740 CDS
T10502
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pbre Pseudomonas brenneri
Pathway
pbre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
QDY63_04740 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbre03400
]
QDY63_04740 (recD)
Enzymes [BR:
pbre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
QDY63_04740 (recD)
DNA repair and recombination proteins [BR:
pbre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QDY63_04740 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
Helicase_RecD
SH3_13
AAA_22
Viral_helicase1
UvrD-helicase
AAA_16
AAA_17
SLFN-g3_helicase
PhoH
AAA_28
DEAD
T2SSE
AAA_25
TraI_hel_assoc_N
NTPase_1
NACHT
AAA_5
UvrD_C
Mg_chelatase
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
WJM92228
LinkDB
All DBs
Position
1055741..1057789
Genome browser
AA seq
682 aa
AA seq
DB search
MSLSTMPLEALAPLDRADDLMHLLARWVERGWLRALDKAFVGFLHELDPQADPLVLLAAA
LTSHQLGHGHVCLDLFETLSAPDFALSLPPEGDVQSGVMLLPSQLLDGQEGAHWCHALAA
SPLVALAVDGSAAAQSRPLVLSGKRLYLRRYWTYERRIDSALRQRLATQEAILADLPQRL
NGLFDQAPPEGVVDWQKLACALATRGAFSIVTGGPGTGKTTTVVRLLALLQAPAVEQGTA
LRIRLAAPTGKAAARLTESISQQVRSLQVSDAVREKIPTEVTTVHRLLGSRPGTRHFRHH
AGNLLPLDVLVVDEASMIDLEMMANLLDALPPHARLVLLGDKDQLASVEAGAVLGDLCRD
AEAGWYSPHTRQWLEHVSGESLAGSGLQEDLDASHPLAQQVVMLRYSRRFGEGSGIGQLA
RWVNQQNPEQARQLLDAGSHDLFRLSLKGEHDRALERLVLDGQGADAHGYRYYLNLLRTS
RPAAETPRDDPRWTDWARQLLQAFDAFQLLCAVRKGPWGVEGLNQRITAALLKARLIDSD
QQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPESDGGPQVLRVAFPRNDGQGGVRFVLPS
RLNDVETVYAMTVHKSQGSEFAHTALILPDALNPVLTKELIYTGITRAKDRFSLIETRGG
VFEEAVRRKVKRLSGLMLELGA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgagcctctcgactatgccgttggaggcactggcaccgctggaccgcgctgacgacctg
atgcacctgcttgcgcgctgggtcgagcgtggctggttgcgggcgctggacaaggcgttc
gtgggctttctccacgaactcgacccacaggccgatcccctggtgctgctggctgcggcc
ctgaccagtcaccaactgggccacggtcacgtgtgcctggacttgttcgaaaccttgagt
gccccggatttcgccctgtcgctgccgccggaaggtgacgtgcagagcggcgtgatgctg
ctgccctcgcaactgcttgatggccaggaaggcgcccattggtgccacgccctggcggcg
agcccgctggtggcgctggccgtcgatggcagcgcggcagcgcaaagccggccgctggtg
ttgtcgggcaagcgcctgtatctgcgacgctactggacctatgagcggcgcatcgacagc
gcactgcgccagcgcctggctacccaggaagccattttggccgacttgcctcaacgcttg
aatggcctgttcgaccaggcgccgccggagggtgtggtcgattggcagaaactcgcctgt
gccctcgccacgcgcggcgcgttcagcatcgtcaccggcggtcccggcaccggcaagacc
accaccgtggtgcgcctgctggcattgttgcaagcgccggcagtggagcagggcacggcg
ctgcgcattcgtctcgcggcgcctaccggcaaggcggcggcacgcctgaccgaatccatc
agccagcaagtgcgttcgctgcaagtgtctgacgcggtgcgcgaaaaaatccccaccgag
gtcaccaccgtgcatcgcctgctgggcagccgtcccggcacccggcattttcgccatcac
gcgggcaacttgttgccgctggatgtgctggtggtcgatgaagcctcgatgatcgacctg
gaaatgatggccaacctgctggacgccttgccaccccatgcgcggctggtgctgctgggg
gacaaggaccaattggcctcggtggaagccggcgcggtgctcggcgacttgtgccgggat
gccgaggctggctggtacagcccccacacccggcaatggctggaacacgtcagcggtgaa
agcttggcgggcagcggcctgcaggaagacctcgacgccagtcatcccctggcacaacaa
gtggtcatgctgcgctactcccgacgtttcggcgaaggcagtggcatcggtcagttggca
cgctgggtcaaccagcagaatcccgaacaggcccgccaactgctggacgccggcagccat
gacctgtttcgcctgagtctcaagggcgagcatgaccgtgccctggagcgcctggtgctg
gacgggcagggcgccgatgcccacggctatcgttattacctgaacctgttgcgcacctcg
cgcccagcggccgagacaccccgcgacgacccgcgctggaccgactgggcgcgccagttg
ttacaagccttcgatgccttccaactgctgtgcgcggtgcgtaaggggccctggggtgtg
gaaggcctcaaccagcgcatcaccgccgcgttgctcaaggcccggctgatcgacagcgac
cagcaatggtacgaaggccgtccggtgctgatgacccgcaacgactacggcctgggcttg
atgaacggcgacattggtatcgccttgaaattgcccgaaagcgacggcggtccgcaggtg
ctgcgtgtggctttcccgcgcaacgatggccagggcggggtgcgttttgtcctgccgagc
cggctcaatgacgtggaaaccgtctacgccatgaccgtgcacaagtcccagggctcggag
ttcgcccacacggccctgatcctgccggatgcgttgaatccggtgttgaccaaggagttg
atctataccggcatcacccgggccaaggatcgcttcagtttgatcgaaacccgtggcggg
gttttcgaggaagcagtacggcgcaaggtgaaacgtttgagtgggctgatgttggagttg
ggtgcgtaa
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