Pseudomonas brenneri: QDY63_05005
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Entry
QDY63_05005 CDS
T10502
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
pbre Pseudomonas brenneri
Pathway
pbre00521
Streptomycin biosynthesis
pbre00523
Polyketide sugar unit biosynthesis
pbre00525
Acarbose and validamycin biosynthesis
pbre00541
Biosynthesis of various nucleotide sugars
pbre01100
Metabolic pathways
pbre01110
Biosynthesis of secondary metabolites
pbre01250
Biosynthesis of nucleotide sugars
Module
pbre_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
pbre00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
QDY63_05005 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
QDY63_05005 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
QDY63_05005 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
QDY63_05005 (rfbB)
00525 Acarbose and validamycin biosynthesis
QDY63_05005 (rfbB)
Enzymes [BR:
pbre01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
QDY63_05005 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
Polysacc_synt_2
RmlD_sub_bind
NAD_binding_4
KR
Sacchrp_dh_NADP
DUF6301
Motif
Other DBs
NCBI-ProteinID:
WJM92277
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All DBs
Position
1114503..1115579
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AA seq
358 aa
AA seq
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MKILVTGGAGFIGSAVIRHIINNTDDSVVNVDKLTYAGNLESLEGVSQNARYAFERVDIC
DRIAVDRVIREHQPDAVMHLAAESHVDRSISGPSEFIETNIIGTYTLLEAVRTYWNGLDD
EKRAAFRFHHISTDEVYGDLEGPEDLFTEATPYQPSSPYSASKASSDHLVRAWSRTYGLP
TLVTNCSNNYGPCHFPEKLIPLIILNALEGKALPVYGNGNQVRDWLYVEDHARALYKVVT
EGIINETYNIGGHNEKQNLEVVHTLCALLDEMRPDSPFKPHADLITYVQDRPGHDMRYAI
DASKIQRELGWTPEETFESGIRKTVEWYLSNPEWVAHVKSGAYQQWIDENYVKRAGQA
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcttgttacaggtggggctgggttcattggttcggcagtcattcggcatatc
atcaacaataccgatgactctgtggtaaacgtcgacaagcttacctatgcaggtaatctg
gagtctctcgaaggcgtctcgcagaatgcccgatacgcttttgagcgagtcgatatctgt
gaccgcatcgcagttgatcgggtcattcgcgagcatcagcctgacgccgtgatgcatctc
gctgcagaatcccatgtagaccgctccatcagcggcccttcggaattcatcgaaaccaac
atcattggtacctacacactgctggaagccgtgcgcacttactggaacgggttggacgac
gagaagcgcgccgcgttccgcttccaccatatctcaactgacgaggtatatggcgacctc
gaaggccctgaggacctgttcaccgaggccacgccttatcagcctagctcaccgtattcg
gccagcaaggccagctccgatcatctggtgcgcgcgtggagcagaacttatggcctaccg
acactggtgaccaactgctcgaacaactatgggccgtgtcacttccctgagaagttgatt
ccgctgattatcctgaatgcgctggaaggcaaggcattgccggtgtatggcaatggcaat
caagttcgggattggctctatgtcgaggatcacgctcgggcgttgtacaaggtagtaact
gaaggcattatcaatgaaacctacaatatcggcggtcacaacgagaagcagaacttggaa
gttgtgcacactttgtgtgcactgctggatgagatgcgtccggactctccattcaagcca
catgccgatctgattacatacgtacaagatcgtcctggtcatgacatgcgctatgccatc
gatgcgagcaagattcagcgcgagctgggctggaccccagaagaaaccttcgagtcgggc
attcgcaagaccgtcgagtggtacctgagcaatccggagtgggttgcccacgtcaagagc
ggcgcatatcagcagtggattgacgagaactacgtcaagcgtgccggacaggcatga
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