Pseudomonas brenneri: QDY63_07290
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Entry
QDY63_07290 CDS
T10502
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pbre Pseudomonas brenneri
Pathway
pbre03030
DNA replication
pbre03430
Mismatch repair
pbre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QDY63_07290 (dnaE)
03430 Mismatch repair
QDY63_07290 (dnaE)
03440 Homologous recombination
QDY63_07290 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbre03032
]
QDY63_07290 (dnaE)
03400 DNA repair and recombination proteins [BR:
pbre03400
]
QDY63_07290 (dnaE)
Enzymes [BR:
pbre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QDY63_07290 (dnaE)
DNA replication proteins [BR:
pbre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QDY63_07290 (dnaE)
DNA repair and recombination proteins [BR:
pbre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QDY63_07290 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
WJM92696
LinkDB
All DBs
Position
1608272..1611793
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG
IKPICGADLWLSNKDPDNALSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGIALLGGNPHEAEVLASEWMQVFPGRFYLEVQRTNRPNDEEH
LHAAVALAEKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRGLDDPRRSKNYSEEQYLK
SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVDEAPLDIAFIPLDDKPTYA
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP
KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYANHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGDLLKRHRGACPVTMEYTGSDAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctgcgcctgcacactgaatattccctggtcgacggcctg
gtacggatcaaaccgctggtcaaaaccctggtgggcatgaacatgcctgccgttgcggtc
actgaccagaacaacatgtgttccctggtcaagttctacaaaaatgccatgggcgccggg
atcaagccgatctgcggtgccgacctctggctgtccaacaaagacccggacaacgccctg
agccgtatcagcctgttggcgatgaatggcgtgggttatcgcaacctgactgaactgatt
tcccgtggtttcatcgacggccagcgcaatggctcgatcatcatcgagcgtgaatgggtt
gccgaggccagcgaaggcctgatcatgctgtcggcggctaaagagggcgagatcgggatc
gcgctgctcggcggtaatccgcacgaggcagaggtactggcgagcgagtggatgcaggtc
ttcccgggccgcttctacctggaagtgcagcgcaccaaccgccccaacgacgaagaacac
ttgcatgccgccgtggccctggccgaaaagctgggtgcgccgctggtggccaccaacgat
gtgcgctttatcaagaaagaagacttcgaggcccacgaaacccgcgtctgcatcggtgaa
ggccgggggctggacgatccacgtcgctcgaagaactatagcgaagagcaatacctcaaa
agtgccgaagaaatggccgagctgttcagtgacctgcccgaggcgctggaaaactccgtc
gaaattgccaagcgctgcaatattgaagtgaagctgggcaagcacttcttgcccaacttc
ccgattcccgatggcatgaccatcgatgagtatttccgcaaggtgtcctttgatggcctg
gaagagcgtctttccgttctgctgcccaaggacaccactgaagattacgaagccaagcgc
caggtgtatgtcgaccggctgaatttcgagctggatatcatcatccagatggggttcccc
ggttacttcctgatcgtaatggactttatccagtgggccaaaagcaacggggtgccggtg
gggcctggccgggggtcgggtgccgggtcgctggtggcctatgtgcagaagatcaccgac
cttgatccgctggaatatgacctgctgttcgaacgcttcctgaacccggaacgggtatcg
atgcccgacttcgacgtcgacttctgcatggatggtcgcgaccgggtcatcgaatatgtg
gccgaaaaatacgggcgtaacgcggtaagccagatcattactttcggttccatggcggcc
aaggcggtcatccgcgacgtggcgcgggtgcagggcaagtcctacggcctggcggaccgt
ttgtcgaagatgattccctttgaagtcggcatgaccctggaaaaggcctacgagcaggaa
gaaatcctgcgcgacttcatcaagatcgatgaagaagctgccgaaatctgggacatggcc
cgcaagctcgaaggcgtggtacgtaacgtcggtaagcacgccggtggtgtagtaatcgcg
ccgaccaagctgacagacttttcgccgatctattgcgacgaagaaggcggtggcctggta
acccagttcgacaaggatgacgtggaggcggccggcctggtgaagttcgacttcctcggc
ctgcggaccctgacgatcatcgattgggcgctcaagacgatcaaccgcgagcgggccaag
gtcgatgaggcgccgctggacatcgcgtttatcccgctggacgacaagccaacctacgcc
ctgctgcaaaaagccgagaccaccgcggtgttccagcttgaatcgcgcggcatgaaggag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcactggtggccctgttc
cgtccgggcccgctgcaatcgggcatggttgatgactttatcaatcgtaagcacgggcgc
gccgaactggcctacccgcactccgattaccagtacgagggcctcaagccagtactggca
ccgacctacggcatcatcctgtatcaggaacaggtgatgcagatcgcccaggtcatggcc
ggctacaccctcggcggtgcagacatgctgcgtcgcgccatgggtaagaaaaagcccgag
gaaatggccaagcagcgcggcggtttcattgaaggctgcgccaccaacaacatcgacgct
gacctggccggtaacatctttgacctggtggaaaaattcgccggttatggcttcaacaaa
tcccactccgccgcctatggcctggtgtcgtaccagactgcctggctgaaagcccactat
ccggcgccgttcatggcggcggtactttcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaagaagtgcggaccatgaaactgcgcctcgacgcgccggatgtgaacgcc
tcggagttcaagttcacggtgaacgacgagggccgcatcatctatggcctgggcgcgatc
aagggcgtgggcgagggcccggtcgaggcgattacggaggcgcgccaggacggcccgttc
aaggatctgttcgatttctgcgctcgggtcgatctcaagcgcatcaacaaacgtaccctc
gatggcctgatccgcagcggtgccctggatcgcctcgggccgtatttccatgacgagccg
aaggcctaccaggccaatatcgaccgtaatcgcgcggtgctgctgaccgccatggaagaa
gcgatcaaggctgccgaacaaaccgcccgtacccacgacagcgggcatgccgacctgttt
ggcgggctgtttgtcgaagaagatgccgatgtgtacgccaatcaccgcaaggccaaggaa
ctgaccctcaaggaacgcctcaagggtgagaaagacaccctgggcctgtacctcaccggt
cacccgattgacgaatatgaaggcgagatccgtcgttttgcccgccagcgcatcatcgac
ctgaagccggcgcgcgatacccagaccgttgccgggatgatcattgccctgcgggtgatg
aagaacaaaaagggcgacaagatgggtttcatcaccctcgacgaccgctcgggccgtatc
gaagcgtcgctgtttgccgacgccttccactccgcgcagtcgctgttgcagaccgacgcg
atggtggtggtggagggggaggtcagcaatgatgacttctccggcggcctgcgcctgcgg
atcaagcgcgtgatgagcatggaagatgcccgtaccaacctggccgaaagcctgcgcctg
aaggttaaaaccgaagccctcaagggcgatcagctacgctggctgggggatctgctcaag
cgccaccgtggcgcgtgcccggtgaccatggagtacaccggcagcgatgccaaggcgatg
ttgcagtttggtgagacgtggcgaattgacccggccgatggcttgattcaagcattgcgt
gaccagttcgggcgtgacaacgtcttcctccaataccgttga
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integrated database retrieval system
