Pseudomonas brenneri: QDY63_08900
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Entry
QDY63_08900 CDS
T10502
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pbre Pseudomonas brenneri
Pathway
pbre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QDY63_08900 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbre03019
]
QDY63_08900 (recQ)
03400 DNA repair and recombination proteins [BR:
pbre03400
]
QDY63_08900 (recQ)
Enzymes [BR:
pbre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QDY63_08900 (recQ)
Messenger RNA biogenesis [BR:
pbre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QDY63_08900 (recQ)
DNA repair and recombination proteins [BR:
pbre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
QDY63_08900 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HTH_40
GerE
HTH_29
Sigma70_r1_2
HTH_23
Motif
Other DBs
NCBI-ProteinID:
WJM92995
LinkDB
All DBs
Position
1937136..1939265
Genome browser
AA seq
709 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPERLVQ
PRMLAFLQSLEISLFAIDEAHCVSQWGHDFRREYLQLGQLAELFPNVPRIALTATADKRT
REEIVERLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK
VDEVAAFLCEQGYPALPYHAGLPNELRAYHQKRFLNEEGLIMVATIAFGMGIDKSNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPQPCGHCDNCVDGVQTWDATEPARQGLSAIFRTG
QRYGVGHLVDVLLGKDNEKIRSFGHQHLSVYGVGKARAEGEWRSLFRQMVARGLVDIDLE
GYGGLRLNDSCRPLLKGEVSLELRRDLKPQTTAKSNSTSQASQLVRGEEREQWEALRALR
RKLAQEHSVPPYVIFPDSTLLEMLREQPTTMAEMARVSGVGARKLERYGQAFLEVLGGQA
EAPKEVADIRHELISLARAGMTPIQIAGQLQCSEKNVYTLLAESIGKQQLSLEQALDLPE
DLLGEIQDAFLDGEGELPPVSDIAPLFTGRMPEGVLYCVRAALQSEFEI
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaacaggctcaacgcgtcctcaaggacatcttcggctacgacagctttcgtggc
cgccagggtgcgatcattgagcgcgtggccagcggtggtgatgcgctggtcctgatgcct
accggtggcggcaagtcgttgtgcttccaggtgcctgcattgttgcgcgaagggctggca
gtggtggtctcgccgttgatcgcgctgatggacgatcaagtggctaccctggaagaactg
ggtgtcgccgccgctgcattgaactcgaccctgagcgccgaacagcaacgcgacctggcc
gcgcggatccgccgtggtgaagtgaagatgctctacctggcgcccgagcgcctggtgcag
ccgcggatgctggcgtttttgcagagcctggaaatctccctgttcgccatcgacgaggcc
cactgcgtgtcccaatggggtcacgatttccggcgtgaatacctgcaactggggcaactg
gccgaactgttccccaatgtgccgcgcatcgccctgactgccacggccgacaagcgcacc
cgcgaagaaatcgtcgagcgcctgcacctgcagaatgccgagcgttttctctccagcttc
gaccgtcccaatatcttttatcgcatcgtacccaaggagcagccgcgcaagcagttgctg
gcgttcctttcggagcggcgcagcgatgccggcattgtctactgcctgtcgcgcaagaag
gtcgatgaagtggccgcgttcctctgtgagcagggctatcccgcattgccgtatcacgcc
ggcctgcccaacgagttgcgggcctatcatcagaagcgcttcctcaacgaggaaggcctg
atcatggtggcgaccattgcgttcggcatgggcatcgacaagtccaacgtgcgcttcgtt
gcgcacatggacctgcccaagtcccttgaggcgtactaccaggaaaccgggcgtgccggc
cgtgacggcctgccggcggatgcctggatggtctacggcctgcaggatgtggtgatgctc
aagcagatgctgcagaactccgaaggcgatgagcgccacaagcgcctggagcagcacaag
cttgatgccatgctgtcgctgtgtgaagagacccgctgccgtcgccagaccctgctcgcg
tatttcgacgaagacatgccccagccgtgcgggcattgcgataactgcgtggacggcgtg
cagacctgggatgccaccgagccggcgcgccagggcctatcggcgatcttccgtaccggc
cagcgttatggtgttggtcatctggtcgatgtgctgctgggcaaggacaacgaaaaaatc
cgcagctttggtcaccagcacctgtcggtgtatggcgtgggcaaggcgcgtgccgaaggc
gaatggcgctcgctgttccgccagatggtggcccgtggcctggtggatatcgacctcgaa
ggctatggcggcttgcgcctgaacgacagttgccggccactgctcaagggcgaggtcagc
ctggagctgcgccgcgacctcaagccgcagaccactgccaagtccaacagcaccagccag
gccagccaactggtgcgtggcgaagaacgcgaacagtgggaagccctgcgtgcattgcgc
cgcaagctggcgcaagagcatagcgtgccgccttacgtcatcttccccgactccaccttg
ctggagatgttgcgcgagcagcccaccaccatggccgaaatggccagggtcagtggtgtt
ggcgcgcgcaagctggagcgttatggccaggccttcctggaagtccttggcggccaggcc
gaggcgccgaaggaagtcgccgatatccgccacgagctgatcagcctggcccgtgccggt
atgacaccgatccagattgcggggcagttgcagtgctcggaaaagaacgtctacaccttg
ctggccgagtccatcggcaagcagcaactgtcactggagcaggccctcgacctgccggaa
gacttgctcggtgaaatccaggacgcgtttctcgacggcgaaggcgaattaccacctgtt
tccgatatagcgccgctgtttaccggccggatgcccgagggcgttttgtactgcgtacgg
gccgctttgcagtcggaattcgagatttga
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