Pseudomonas brenneri: QDY63_22795
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Entry
QDY63_22795 CDS
T10502
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pbre Pseudomonas brenneri
Pathway
pbre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
QDY63_22795 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbre03400
]
QDY63_22795 (sbcB)
Enzymes [BR:
pbre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
QDY63_22795 (sbcB)
DNA repair and recombination proteins [BR:
pbre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
QDY63_22795 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QDY63_22795 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
QDY63_22795 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WJM90168
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All DBs
Position
complement(4933908..4935335)
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AA seq
475 aa
AA seq
DB search
MTSIFWYDYETTGINPRSDRPLQVAGVRTDLDLNEIGPPVNLYCQPSEDILPHPAACMIT
GITPGQLAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVMRTAYALRPDGIVWPEQDGHVTLKLERLTAANGIDHGQAHEALADVR
ATIALARLVRDKQPKLYEWLFQLRSKQRVMDQIRLLQPMVHISGRFSAERHYLGVVLPLA
WHPRNRNALIVCDLGLDPQGLLDLDAETLRQRLYTRRDELAEGELPVPLKLIHINRCPVV
APLSVLRAQDQQRLNLDMSEYQARALRLTDAQELWQDKLPAIYAEEDFAASTDPEQQLYD
GFIGDRDRRLCEQVRTAEPAQLARQQWPFDDHRLPELLFRYRARNFAYTLDDEEQQRWKL
FCQQRLSDADYGAPNTLESFNKARLELDVSATSFQRQVLDEWQEYADALRQRLSL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcgatcttctggtacgactatgaaaccaccggcatcaacccacgcagcgaccgc
ccgctgcaggtcgccggggttcgcaccgaccttgacctcaatgagatagggccgccggtc
aacctctattgccagcccagcgaggatatcctgccgcacccggctgcgtgcatgatcact
ggcattacccccggccaactggcggaaaaaggcctggccgaagccgatttcatgacgcgg
gtgcatgccgaactggcggcccccggcacctgcggcgcgggttacaacaccctgcgtttc
gacgatgaaatgacccgctacagtttgtatcgcaactttttcgacccttatgcgcgggaa
tggcagggcgggaacagtcgttgggacttgatcgatgtgatgcgcacggcttatgccctg
cgtcccgacggtatcgtctggcccgagcaggacgggcacgtgaccctcaagctggagcgc
ttgacggcggccaatgggatcgaccatggccaggctcacgaggccttggccgacgtgcgt
gccaccatcgccttggcgcgcctggtccgggacaagcaacccaagttgtacgagtggttg
tttcaactgcgcagcaagcagcgggtcatggatcaaatccgcctgttgcagcctatggtg
catatttccgggcgtttctccgccgaacgccattacctgggggtcgtcctgccgctggcg
tggcatccgcgcaatcgcaacgcgttgattgtctgtgacctggggctcgacccgcagggg
ttgctggacctggatgccgaaaccctgcgccagcgtctgtatacccgacgcgatgagttg
gccgaaggtgagttgccggtgccgctcaaactaatacacatcaatcgttgcccggtggtt
gcgccgctgagtgtgttgcgggcacaagaccagcagcgcttgaatctggacatgagtgaa
tatcaggcccgggcactgcggctaactgacgcacaggaactttggcaggataaattgcca
gcgatttatgccgaagaagatttcgctgccagcaccgacccggagcaacagctctacgat
ggttttattggtgatcgggatcggcggttatgtgaacaagtccggactgcggagcctgcg
caattagcacgccagcagtggccttttgatgatcatcgtttgccggaattattgtttcgc
tatcgtgcccgtaactttgcgtacaccttggacgatgaagagcaacaacgctggaaacta
ttctgtcagcaacgcttgtcagacgcggattacggtgcgcccaatacccttgagagtttc
aataaagccaggcttgaattggacgttagtgctacatcgtttcagcgtcaggtactggat
gaatggcaggaatatgctgacgctttacgccagcgcctgagtctgtaa
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