KEGG   Pseudovibrio brasiliensis: KGB56_21510
Entry
KGB56_21510       CDS       T11661                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
pbri  Pseudovibrio brasiliensis
Pathway
pbri03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pbri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KGB56_21510 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pbri03021]
    KGB56_21510 (rho)
   03019 Messenger RNA biogenesis [BR:pbri03019]
    KGB56_21510 (rho)
Transcription machinery [BR:pbri03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     KGB56_21510 (rho)
Messenger RNA biogenesis [BR:pbri03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     KGB56_21510 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 S1CSD-TOTE-2 Fungal_virus_P2_C NACHT AAA
Other DBs
NCBI-ProteinID: QUS55829
UniProt: A0ABX8ALA6
LinkDB
Position
complement(4726684..4727949)
AA seq 421 aa
MREMKLRDLKSKTPTELLSFAEEHEVENASTMRKQELLFAILKRLAEQDIEIIGEGVVEV
LQDGFGFLRSPDANYLPGPDDIYVSPSQIRRFSLRTGDTVEGQIRSPKEGERYFALLKVN
KINFEDPEKARHKVHFDNLTPLYPDERFNLEIENNTSKDISARIIDLVAPLGKGQRALIT
APPRTGKTVFLQNIANSITTNHPECYLIVLLIDERPEEVTDMQRTVNGEVVSSTFDEPAS
RHVQVAEMVIEKAKRLTEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKISDKRVFPA
VDIQRSGTRKEELLVPADKLKKTFVLRRILSQMGTVDAVEFLLDKLRQTKSNDDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaatgaaactcagagaccttaaatccaaaaccccaactgaactcctttcattt
gctgaggagcatgaagttgaaaatgcaagcaccatgcgtaaacaggagcttctgtttgcc
attcttaaaagacttgcagaacaagatattgaaatcatcggcgaaggtgtcgtagaggtc
ctccaagatggatttggattcctccgttcaccagatgcaaactacttgccgggtcccgat
gatatttacgtttctccttcacagatccgacgcttttctctgcgtaccggtgatactgta
gaaggccagatccgtagccctaaagaaggtgagcgttacttcgcccttctgaaggtcaac
aaaatcaactttgaagaccctgaaaaggcgcgtcacaaagttcattttgacaacctcaca
ccgctttaccctgatgaacgtttcaatcttgagattgaaaacaacacatcaaaagatatc
tctgctcgcatcattgatctggttgcaccgcttggtaaaggtcagcgcgcactgattact
gcaccgcctcgtaccggtaagacagtattcctgcagaatatcgcgaattccatcactacc
aatcacccagagtgttacctgatcgttcttctgatcgacgaacgcccggaagaggtgacg
gatatgcagcgcaccgtgaatggtgaagttgtgtcttccacctttgatgagccagcttcg
cgtcacgttcaggttgctgaaatggtgattgagaaggcaaaacgtctgaccgaacatggt
cgcgacgttgtgatccttctggactccatcacgcgtcttggccgcgcctacaacactgtt
gtgccttcctccggtaaggttctgactggtggtgttgatgcgaacgccctgcagcgtcct
aagcgcttcttcggtgctgcccgtaacattgaagagggtggctctttgaccatcatcgca
acggctctgatcgataccggcagccgtatggatgaggttatcttcgaagaatttaaaggt
actggtaactccgaaattatcctggatcgtaagatctctgataagcgcgtgttcccagca
gttgatattcagcgctccggtactcgtaaggaagaacttcttgttcctgctgataagctc
aagaagactttcgttctgcgtcgtattctcagccagatgggtactgttgatgccgttgag
ttcctgctcgacaagctgcgtcagacaaagtccaacgatgatttcttcgactccatgaac
acataa

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