Pseudonocardia broussonetiae: HOP40_03755
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Entry
HOP40_03755 CDS
T07210
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbro
Pseudonocardia broussonetiae
Pathway
pbro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HOP40_03755 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbro03400
]
HOP40_03755 (mfd)
Enzymes [BR:
pbro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HOP40_03755 (mfd)
DNA repair and recombination proteins [BR:
pbro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HOP40_03755 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QJY45051
UniProt:
A0A6M6JF03
LinkDB
All DBs
Position
complement(762836..766381)
Genome browser
AA seq
1181 aa
AA seq
DB search
MAKLAGLLHSVLADSDLRAVLDAARDTRSTDVPGLRIEGPAALRPFLAAGLAEARTVLAV
TATDREAEDLGAALSDLVDADTVVVLPSWETLPHERLSPRPDTVGRRLSILRRLSDPDTA
PRVVVTAARSLIQPIAPGLGRLEPVALRVGDTADFEALLERLVELAYTRVEMVTTRGEFA
VRGGIVDVFPPTADQPLRVEFWGDEVSELRTFSVADQRSVAPVEELVAPGCRELLLTAPV
RERAAALARTHENNPPLRELLDHLANGIPSEGMESLVPVLTGGDLELLTDLLPAGAAVLV
ADPERVRTRSADLVRTGQEFLEASWFAAATGGDAPIDVGASAYRDLNDVLHHAAATAHPV
LTFSPLLSGRDDALAPPVHEVESYRGDTDRALVDLRAHVAGGGTAVLVVGGAGTAQRSLE
QLREADVPAALVDELTDDPEKGLVTVTCGRLTQGFTAGPLVLLTEADLTGNRAAATAPAK
MPSKRRNTVDLVTLKPGDHVVHSQHGIGKFVEMRERTVGGATREYLVLEYASSKRGQPAD
RLFVPTDALDEISRYVGGEIPTLNKLGGGDWAKTKGKARKAVRQIAAQLVQLYAARQSAP
GHAFAKDTPWQREMEDAFPYTETPDQLAAIDEVKADMERPVPMDRVISGDVGFGKTEIAV
RAAFKAVQDGKQVAVLVPTTLLATQHLDTFTERMRAFPVTVRGLSRFTDAAEAKETVKGL
AEGTVDVVVGTHRLLQSGVRWKDLGLVIVDEEQRFGVEHKEHITALRTHVDVLTLSATPI
PRTLEMSLAGIREMSTIATPPEDRHPTLTYVGAYDTKQVAAAIRRELLRDGQVFYVHNRV
STIDRAAKTIRDLVPEARIAVAHGQMNEDLLERTVNGFWHNEFDVLVCTTIVENGLDISN
ANTLIVERSDTLGLSQLHQLRGRVGRGRERGYAYFLFPPEHPLTETAHDRLATIAQHSEL
GAGAAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYIRLVGEAVAAFRQQAGAGEGEAEE
ALTEVRVDLPIDAHVPHDYVTGERLRLEVYRKIAEAGDRAALDAIVDELTDRYGEPPAPV
RNLLAVAEFRQVCRGLGIGEVAVAGNAVRVGPVDLLDSGQMRLTRLYPKSQYKAAARAVI
VPKPVAGGRIGGAPLRDVELLEWATRLVHDLAAPAKAPAAG
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
gtggccaagctcgccggtctgctgcactccgtcctcgccgactccgacctccgggccgtc
ctcgacgccgcccgcgacacccgctccaccgacgtccccgggctccggatcgaggggccg
gccgcgctgcgcccgttcctggcggcgggcctcgccgaggcgcgcacggtcctggccgtc
accgccaccgaccgcgaggccgaggacctgggcgcggcgctctccgacctcgtcgacgcc
gacaccgtcgtcgtgctgcccagctgggagacgctgccccacgagcgcctctcgccgcgc
cccgacaccgtcggccgccgcctgtcgatcctccgtcggctgtccgacccggacaccgcg
ccgcgggtcgtggtcaccgccgcccgcagcctgatccagccgatcgcgcccggactgggc
cgcctggagccggtcgcgctgcgggtcggcgacaccgccgacttcgaggcgctgctggag
cgcctggtcgagctggcgtacacgcgggtcgagatggtcaccacccgcggcgagttcgcg
gtgcgcggcgggatcgtcgacgtcttcccgcccacggccgaccagccgctgcgcgtggag
ttctggggcgacgaggtcagcgagctgcgcacgttctccgtcgccgaccagcggtccgtc
gcgccggtggaggagctcgtcgcgcccggctgccgggagctgctgctcaccgcgcccgtc
cgcgagcgcgcggccgcgctggcccgcacccacgagaacaacccgccgctgcgcgagctg
ctcgaccacctcgccaacggcatcccgtccgagggcatggagtccctcgtccccgtgctc
accgggggcgacctggagctgctcaccgacctgctcccggccggcgcggccgtgctcgtc
gccgaccccgagcgcgtgcgcacccgcagcgccgacctcgtccgcaccggccaggagttc
ctggaggcgtcctggttcgccgcggccaccggcggcgacgccccgatcgacgtcggcgcc
tcggcctaccgcgacctgaacgacgtgctgcaccacgccgccgccaccgcccatcccgtg
ctgacgttcagcccgctgctctcgggccgcgacgacgcgctcgccccgcccgtgcacgag
gtcgagtcctaccgcggcgacaccgaccgcgcgctggtcgacctgcgcgcgcacgtcgcg
ggcggcggcacggccgtgctcgtcgtcggcggtgcgggcaccgcgcagcgcagcctggag
cagctgcgcgaggccgacgtgcccgccgctctcgtcgacgagctcacggacgaccccgag
aagggtctggtcaccgtcacctgcgggcggctcacgcagggcttcaccgccgggccgctg
gtcctgctgaccgaggccgacctcaccggcaaccgcgcggccgccacggccccggccaag
atgccgagcaagcgccgcaacaccgtcgacctcgtcacgctcaagcccggcgaccacgtc
gtgcactcccagcacggcatcggcaagttcgtcgagatgagggagcgcacggtcggcggg
gccacccgcgagtacctggtgctggagtacgcgtcgagcaagcggggccagccggccgac
cggctgttcgtcccgaccgacgcgctggacgagatcagccgctacgtcggcggcgagatc
ccgacgctcaacaagctcggcggcggcgactgggcgaagacgaagggcaaggcgcgcaag
gccgtccgccagatcgcggcgcagctcgtgcagctctacgcggcgcgccagtccgcgccc
ggccacgcgttcgcgaaggacacgccgtggcagcgcgagatggaggacgccttcccctac
accgagacgcccgaccagctcgccgcgatcgacgaggtcaaggcagacatggagcgcccg
gtcccgatggaccgcgtgatctccggcgacgtcgggttcggcaagaccgagatcgcggtc
cgggcggcgttcaaggcggtgcaggacggcaagcaggtggccgtcctcgtcccgacgacg
ctgctcgccacgcagcacctcgacacgttcaccgagcggatgcgcgcgttcccggtcacg
gtgcgcgggctgtcccggttcaccgacgccgcggaggcgaaggagacggtgaagggcctg
gccgagggcaccgtcgacgtcgtcgtcggcacgcaccggctgctgcagagcggcgtgcgc
tggaaggacctcgggctggtcatcgtcgacgaggagcagcgcttcggcgtcgagcacaag
gagcacatcacggcgctgcgcacccacgtcgacgtgctgacgctgtcggccacgccgatc
ccgcgcacgctggagatgagcctggccggcatccgggagatgtcgacgatcgcgacgccg
cccgaggaccgccaccccacgctcacctacgtcggcgcctacgacaccaagcaggtcgcc
gccgcgatccgccgcgagctgctgcgcgacggccaggtgttctacgtgcacaaccgggtc
tcgacgatcgaccgggccgcgaagacgatccgcgacctcgtccccgaggcccggatcgcg
gtggcgcacgggcagatgaacgaggacctgctcgagcgcaccgtcaacggcttctggcac
aacgagttcgacgtcctggtctgcaccacgatcgtcgagaacggcctcgacatctccaac
gccaacaccctgatcgtcgagcgctccgacaccctcgggctctcgcagctgcaccagctc
cgcgggcgcgtcggccgcggccgcgagcgcggctacgcctacttcctgttcccgcccgag
cacccgctcaccgagaccgcgcacgaccggctggccaccatcgcccagcactcggagctg
ggcgcgggcgcggccgtcgccatgaaggacctggagatccgcggcgcgggcaacatcctg
ggcgcggagcagtccgggcacatcgccggcgtcggcttcgacctctacatccggctcgtc
ggcgaggccgtcgcggcgttccgccagcaggccggggcgggcgagggcgaggccgaggag
gccctcaccgaggtccgcgtcgacctgccgatcgacgcccacgtgccgcacgactacgtc
accggcgagcggctgcgcctggaggtctaccgcaagatcgccgaggcgggcgaccgcgcc
gcgctcgacgcgatcgtcgacgagctcaccgaccgctacggcgagccgcccgccccggtg
cgcaacctgctggccgtcgcggagttccggcaggtgtgccgggggctcgggatcggcgag
gtcgcggtggccggcaacgcggtgcgcgtcgggccggtcgacctgctcgactccgggcag
atgcggctcacccggctctacccgaagtcgcagtacaaggcggcggcgcgggcggtcatc
gtgcccaagccggtggccggcgggcggatcggcggggcgccgctgcgcgacgtcgagctg
ctggagtgggccacccggctggtgcacgacctggccgctccggcgaaggcgcccgccgcg
gggtaa
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