Pseudonocardia broussonetiae: HOP40_05855
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Entry
HOP40_05855 CDS
T07210
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pbro
Pseudonocardia broussonetiae
Brite
KEGG Orthology (KO) [BR:
pbro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbro03032
]
HOP40_05855 (topA)
03400 DNA repair and recombination proteins [BR:
pbro03400
]
HOP40_05855 (topA)
Enzymes [BR:
pbro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HOP40_05855 (topA)
DNA replication proteins [BR:
pbro03032
]
Prokaryotic type
DNA Topoisomerases
HOP40_05855 (topA)
DNA repair and recombination proteins [BR:
pbro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HOP40_05855 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
QJY50417
UniProt:
A0A6M6JTN7
LinkDB
All DBs
Position
1193472..1196189
Genome browser
AA seq
905 aa
AA seq
DB search
MIVESGTKAAKIQKFLGKDYVVEASVGHIRDLPRGAADVPAKHKGEAWARLGVDVDNSFA
PLYIITPEKRSKVAELREALKSVDEVLLATDPDREGEAIAWHLLDTLKPKVPVRRMVFHE
ISEPAIRAAVENLRDLDQDMVDAQETRRILDRLYGYEVSPVLWKKVMPKLSAGRVQSVAT
RIVVARERERMAFVSASYWDIAAQMDAGADATPRQFGSRLVAIDGARVATGRDFGPDGRL
KSDATALDEAGARRLAEALEGRDLTVESVESKPYTRKPYPPFMTSTLQQEAGRKLRFSAD
RTMRSAQRLYENGYITYLRTDSTTLSASAIDAARSQARELYGDAYVPDQPRQYTRKVKNA
QEAHEAIRPAGDVFRTPGEIAREVDGDDFRLYELIWQRTVASQMADARGTTVSVRIAGTA
ATGEAVTFATSGRTITFPGFLRAYVETVDDQAGGEADDAESRLPELTKGQSLTAASLTAE
GHSTNPPSRFTEPSLIKQLEDLGIGRPSTYASIIKTIQDRGYVWKKGQALVPSWIAFAVV
GLLEHHFGRLVDYDFTAAMEDELDAIAAGTQGRTSWLSGFYFGAEQGSEGSVARAGGLKK
LVGVNLEEIDAREINSVPVFDDVVVRVGRYGPYLERVRDGQSQRANLPEDLPPDELTPEV
AEQLFSVPQEGRSLGVDPISGHEIVAKEGRYGPYVTEVLPEPEAPPAAEGAKPKKAPAKP
KPRTGSLFKGMSTETITLEDALRLLSLPRLVGTDPETGEEITAQNGRYGPYLKKGTDSRS
LTDEEQLFTVTLEEAVEIYKQPKQRGRRTAAATPPLRELGVDANSKKPMVIKDGRFGPYV
TDGETNASLRKGDSVEQITDERASELLAERRAKAPAPKKAPARKAPAKKPAARKPATRKK
APVEK
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgtcgagtcgggcacgaaggccgcgaagatccagaagttcctgggcaaggactac
gtcgtcgaggcctccgtcggccacatccgcgacctgccccgcggtgccgccgacgtcccc
gccaagcacaagggcgaggcctgggcccgcctgggcgtcgacgtcgacaactccttcgct
ccgctctacatcatcacgccggagaagcgcagcaaggtcgccgagctccgtgaggcgctg
aagtccgtcgacgaggtcctgctcgccacggaccccgaccgcgagggcgaggccatcgcc
tggcacctgctcgacacgctcaagccgaaggtcccggtccgccggatggtcttccacgag
atcagcgagccggccatccgcgccgcggtggagaacctgcgcgacctcgaccaggacatg
gtcgacgcccaggagacgcgccgcatcctcgaccgcctctacggctacgaggtctccccc
gtgctgtggaagaaggtcatgccgaagctctcggcgggccgggtgcagtcggtggccacg
cggatcgtggtggcgcgcgagcgcgagcgcatggcgttcgtgtcggcgtcgtactgggac
atcgccgcgcagatggacgcgggcgccgacgccaccccgcgccagttcggctcgcgcctg
gtcgcgatcgacggcgcccgggtcgccacgggccgcgacttcggccccgacggccgcctc
aagtccgacgccaccgccctcgacgaggccggcgcccgccgcctggccgaggcgctggag
gggcgcgacctcaccgtcgagtcggtcgagtcgaagccctacacgcgcaagccctacccg
ccgttcatgacctccacgctgcagcaggaggccggccgcaagctccgcttctccgccgac
cgcacgatgcgcagcgcgcagcggctctacgagaacggctacatcacctacctccgcacc
gactccaccacgctgtcggcctcggccatcgacgcggccaggagccaggcgcgcgagctc
tacggtgacgcctacgtccccgaccagccgcggcagtacacccggaaggtcaagaacgcg
caggaggcccacgaggccatcaggcccgcgggcgacgtcttccgcacgcccggcgagatc
gcccgcgaggtcgacggcgacgacttccgcctctacgagctgatctggcagcgcaccgtc
gcctcgcagatggccgacgcgcgcggcacgacggtcagcgtccgcatcgcgggcacggcc
gccaccggcgaggccgtcacgttcgcgacgtccgggcgcaccatcaccttccccggcttc
ctgcgcgcctacgtcgagaccgtcgacgaccaggcgggcggcgaggccgacgacgccgag
tcgcgcctgcccgagctgacgaagggccagtcgctgacggccgcgtcgctcacggccgag
gggcactcgaccaacccgccgtcgcggttcaccgagccgagcctgatcaagcagctcgag
gacctcggcatcggccgcccgtccacctacgcctcgatcatcaagacgatccaggaccgc
gggtacgtgtggaagaaggggcaggcgctggtcccctcgtggatcgcgttcgccgtcgtc
gggctgctggagcaccacttcggccggctcgtcgactacgacttcaccgccgccatggag
gacgagctcgacgccatcgccgccggcacgcagggccgcacgagctggctgtcgggcttc
tacttcggcgccgagcagggctccgagggctcggtggcgcgcgcgggcgggctgaagaag
ctcgtcggcgtcaacctggaggagatcgacgcgcgggagatcaactccgtgccggtcttc
gacgacgtcgtggtccgcgtcggccgctacggcccctacctggagcgcgtgcgcgacggg
cagtcccagcgcgccaacctgcccgaggacctgccgcccgacgaactcacgcccgaggtc
gccgagcagctgttctcggtgccgcaggagggccgctcgctgggcgtcgacccgatcagc
gggcacgagatcgtcgccaaggagggccgctacgggccctacgtcaccgaggtcctgccc
gagccggaggccccgccggccgccgagggggccaagccgaagaaggcgcccgcgaagccg
aagccgcgcaccgggtcgctgttcaagggcatgtcgacggagacgatcacgctcgaggac
gcgctgcggctgctgtcgctgccacggctggtgggcaccgacccggagaccggcgaggag
atcaccgcgcagaacggccgctacgggccctacctcaagaagggcaccgactcgcggtcg
ctcaccgacgaggagcagctgttcacggtcaccctcgaggaggccgtggagatctacaag
cagcccaagcagcgcgggcggcgcacggccgcggccaccccgccgctgcgcgagctcggc
gtcgacgcgaactcgaagaagccgatggtgatcaaggacgggcggttcggcccgtacgtc
accgacggcgagacgaacgcgagcctgcgcaagggcgacagcgtcgagcagatcaccgac
gagcgggccagcgagctgctggccgagcggcgggcgaaggcgccggcgccgaagaaggcc
ccggcgcgcaaggcgcccgcgaagaagccggcggcccgcaagccggcgacgcgcaagaag
gccccggtcgagaagtag
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