Pseudonocardia broussonetiae: HOP40_12105
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Entry
HOP40_12105 CDS
T07210
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pbro
Pseudonocardia broussonetiae
Pathway
pbro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HOP40_12105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbro03021
]
HOP40_12105
03400 DNA repair and recombination proteins [BR:
pbro03400
]
HOP40_12105
Enzymes [BR:
pbro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HOP40_12105
Transcription machinery [BR:
pbro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HOP40_12105
DNA repair and recombination proteins [BR:
pbro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HOP40_12105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QJY46456
UniProt:
A0A6M6JFX4
LinkDB
All DBs
Position
2436679..2440593
Genome browser
AA seq
1304 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVNKELRHNDLSTLETEMSVERKRVENRRDTDLEERAQKLEAD
LAELEAEGAKGDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTAFTKLDVQQLIADESI
YRELYDRYGDYFTGAMGAEAIQTLLQNFDIPAEAENLRETIRSGKGQKKLRALKRLKVVA
AFQTTGNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
SQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQSEARVLMLSSNNILSPASGRPLAMPRLDMVTGIYHLSRLREGAHGEGG
IYSSVAEAIMAYDRKVLHLQAPMKIRLHGVTPPAAVAESIGWSEGDPWLADTTLGRVLFN
ELLPADYPYVNEILPKKRQAMIINDLAERYSMTEVAQCLDRLKDAGFYWATRSGVTMAVS
DVIVPPNKQEILDGYEVKAEQVNKRYLRGALSHQERNDEMVKIWTQASEEVARAMEANFP
EDNPIPTIVKSGAAGNMTQVRQLAGMRGLVANPKGEYIPRPIKANFREGLSVLEYFISTH
GTRKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGVTMAVTEETSDGRLIPHR
YLRTSVYARTAGEDAIGADGQVVVRRGEDLGDPALDAIVAAGVKTIKVRSPLTCTSATGI
CGMCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGDDITTGLPRVQE
LFEARVPKGKAPIADVDGRISIEDGERFWKITLTPDDGGEEIVYEKLSKRQWLAMTTVDG
QERPLADGDHVHVGQLLLEGTADPHEVLRVMGPREVQLHLVREVQKVYRTQSVDIHDKHI
EVIVRQMLRRVTIIDSGATEFLPGALAERADFETQNRRVVAEGNEPASGRPVLMGITKAS
LATESWLSAASFQETTRILTDAAINGKRDKLVGLKENVIIGKLIPAGTGIARYRDIQVQP
TEEARAAAYALPSYDDGYYSPDVFGTGTGAAVPLDDYDFGRDYR
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgaactgcgcatcggcctggccacggccgaggacatc
cgtcagtggtcgcatggtgaggtcaagaagcccgagacgatcaactaccgcaccctcaag
ccggagaaggacggactcttctgcgagaagatcttcggcccgacccgcgactgggagtgc
tactgcggcaagtacaagcgcgtccggttcaagggcatcatctgcgagcgctgcggcgtg
gaggtcacgcgcgccaaggtgcgtcgtgagcggatggggcacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggtgtgccgagccgcctgggctacctgctcgacctg
gcgcccaaggacctcgagaagatcatctacttcgcggcctacgtgatcacgtcggtcaac
aaggagctccgccacaacgacctgtccacgctcgagaccgagatgagcgtggagcgcaag
cgggtcgagaaccggcgcgacaccgatctcgaggagcgggcccagaagctcgaggccgac
ctggccgagctcgaggccgagggcgcgaagggcgacgtccgccgcaaggtcaaggacggt
ggcgagcgcgagatgcgccagctccgcgaccgcgcccagcgcgagctggaccggctcgac
gagatctggaccgcgttcaccaagctcgacgtgcagcagctcatcgccgacgagtcgatc
taccgggagctctacgaccggtacggcgactacttcaccggcgccatgggcgccgaggcg
atccagacgctgctgcagaacttcgacatcccggccgaggccgagaacctgcgggagacc
atccgcagcggcaaggggcagaagaagctccgcgccctcaagcgcctcaaggtcgtcgcg
gcgttccagaccaccggcaactcgccgatgggcatggtgctcgactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgccacgagcgacctg
aacgacctgtaccgccgggtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccggccggtgacgggcccgggcaaccggccgctcaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggccctggagctgttcaagccgttcgtcatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgcgaagcgcatggtcgagcgcggccgc
tcgcaggtgtgggacgtgctcgaggaggtcatctccgagcacccggtgctgctcaaccgc
gcaccgaccctgcaccgcctcggcatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgccgacttcgacggtgaccag
atggcggtccacctgccgctgtcggccgaggcgcagtccgaggcccgcgtgctgatgctg
tcgtcgaacaacatcctgtcgccggcgtccgggcgtccactcgccatgccgcgactcgac
atggtcacgggcatctaccacctgagccggctgcgcgagggcgcccacggcgagggcggg
atctactcctcggtcgccgaggcgatcatggcgtacgaccgcaaggtgctccacctgcag
gcgccgatgaagatccgcctgcacggggtcaccccgccggccgcggtcgcggagtccatc
ggctggtccgagggcgacccgtggctggccgacacgaccctgggccgggtgctgttcaac
gagctgctgccggcggactacccgtacgtcaacgagatcctgccgaagaagcgccaggcg
atgatcatcaacgatctggccgagcgctactcgatgaccgaggtcgcgcagtgcctcgac
cggctcaaggacgcgggcttctactgggccacgcgctccggggtcacgatggccgtctcc
gacgtcatcgtgccgccgaacaagcaggagatcctggacggctacgaggtcaaggccgag
caggtcaacaagcgctacctgcgcggggccctgtcccaccaggagcgcaacgacgagatg
gtcaagatctggacccaggcgtccgaagaggtcgcccgggccatggaggccaacttcccc
gaggacaacccgatcccgacgatcgtcaagtcgggcgcggcgggcaacatgacccaggtc
cggcagctcgccggtatgcgtggtctggtggccaaccccaagggcgagtacatcccccgt
ccgatcaaggccaacttccgtgagggcctgtcggtgctggagtacttcatctccacgcac
ggcacccgcaagggcctcgccgacacggcgctgcgcaccgccgactcgggctacctgacc
cgtcgtctggtggacgtgtcgcaggacgtcatcgtccgcgaggtcgactgcggcaccgag
cggggcgtcacgatggccgtcacggaggagacctccgacggccgcctgatcccgcaccgc
tacctgcgcaccagcgtctacgcccgcaccgcgggcgaggacgcgatcggcgccgacggc
caggtcgtggtccgccgcggcgaggacctcggcgacccggcgctcgacgcgatcgtcgcg
gccggcgtcaagacgatcaaggtgcgcagcccgctcacctgcacgtcggccaccggcatc
tgcggcatgtgctacggccgctcgatggccaccggcaagctggtggacgtcggcgaggcg
gtcggcatcgtcgcggcgcagtcgatcggtgagcccggcacccagctgacgatgcgcacg
ttccacaccggtggtgtggcgggcgacgacatcacgacgggtctgccgcgcgtccaggag
ctcttcgaggcccgcgtcccgaagggcaaggcgcccatcgccgacgtcgacggccgcatc
tccatcgaggacggcgagcgcttctggaagatcaccctcacgccggacgacggcggcgag
gagatcgtctacgagaagctgtcgaagcggcagtggctcgcgatgaccacggtcgacggc
caggagcgtccgctggccgacggcgaccacgtgcacgtgggccagctgctcctcgagggc
acggccgacccgcacgaggtgctgcgcgtcatgggcccgcgcgaggtgcagctgcacctg
gtgcgtgaggtgcagaaggtgtaccgcacgcagagcgtggacatccacgacaagcacatc
gaggtcatcgtccggcagatgctgcgccgggtcacgatcatcgactcgggggccacggag
ttcctgcccggcgcactcgccgagcgggccgacttcgagacccagaaccggcgcgtcgtg
gccgagggcaacgagcccgcgtccggccgcccggtcctgatggggatcacgaaggcctcg
ctggccacggagtcgtggctgtccgcggcctcgttccaggagaccacccggatcctcacc
gatgccgcgatcaacgggaagcgcgacaagctcgtcgggctcaaggagaacgtgatcatc
ggcaagctgatcccggccggtacgggcatcgcccgctaccgcgacatccaggtccagccc
acggaggaggcccgcgcggccgcctacgcgctgccgagctacgacgacggctactacagc
cccgacgtgttcggcacgggcacgggtgccgccgtgccgctggacgactacgacttcggc
cgcgactaccgctag
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