Pseudonocardia broussonetiae: HOP40_17065
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Entry
HOP40_17065 CDS
T07210
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pbro
Pseudonocardia broussonetiae
Pathway
pbro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HOP40_17065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbro03019
]
HOP40_17065
Messenger RNA biogenesis [BR:
pbro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HOP40_17065
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QJY47305
UniProt:
A0A6M6JJE3
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All DBs
Position
3452370..3454154
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AA seq
594 aa
AA seq
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MSRPPARSDRNRSDRRSRPPRRDQNRPPAVVEATQPGLPTQPPGPLPEGALRVLTLGGIG
EIGRNMTVFEYDGRLLVVDSGVLFPDADAPGVDLILPDFRPILDRLGDIDALVLTHGHED
HIGAVPFLLRQRPDLLIVGSPFTLALVAAKCKEHRLTPHMLVVNEGDRLRHGTFECEYFA
VAHSIPQCLAVAIRTPAGVVLHTGDIKLDQLPLDGRLTDLPGFSRLGDEGVDLFLCDSTN
ADVPGVSPSEASLGPAIAQAIGQASGRAFVACFASNVHRVQQIIDGAVLHGRRVCLIGRS
MLRNMEIATDLELLSVPEGVMVALDDVEEVPEDKLLVVCTGSQGEPMAALSRIARGEHRT
FQMRSTDTVILSSSLIPGNEHAVFGVVNRLRRAGIQVIDNRNANVHVSGHAFAGELLFLY
NAVRPSNVMPVHGEWRHLRANAALAEKTGVAHDAVVVTENGITVDLVDGRAVISGRVEVG
RAYVDGVATGDIEQPTLADRIVLGEGGFISITVAIDATTGRAVAPPTLSGRGFSEDPKAL
EAVLPIVEQELARTGSDGIVDTHRVAQQVRRVVGKWVGETYRRRPMIVPTVIAV
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
ttgagccgtccccctgcacggtccgaccgcaacaggtccgaccgtcggtcccgcccgccc
cggcgcgaccagaaccgacccccggccgtcgtcgaagccacccagcccggcctgcccacg
caacccccgggcccgctgcccgagggcgcgctgcgcgtgctcaccctgggcggcatcggc
gagatcggccgcaacatgaccgtcttcgagtacgacggccgcctgctcgtcgtcgactcc
ggggtgctgttccccgacgccgacgcccccggcgtcgacctgatcctgcccgacttccgc
cccatcctcgaccgcctcggcgacatcgacgcgctcgtgctcacccacggccacgaggac
cacatcggcgcggtgccgttcctgctgcgccagcgccccgacctgctgatcgtcgggtcg
ccgttcacgctcgcgctggtggcggccaagtgcaaggagcaccgcctcaccccgcacatg
ctggtcgtcaacgagggcgaccgcctgcgccacggcacgttcgagtgcgagtacttcgcc
gtcgcgcactcgatcccgcagtgcctcgcggtcgcgatccgcacgccggccggcgtcgtc
ctgcacaccggcgacatcaagctcgaccagctcccgctcgacgggcgcctcaccgacctg
cccggcttctcgcgcctgggcgacgagggcgtcgacctgttcctgtgcgactccaccaac
gccgacgtgcccggggtgtcgccctcggaggcctcgctcggcccggccatcgcgcaggcg
atcggccaggcgtcggggcgtgcgttcgtggcgtgcttcgcctccaacgtgcaccgcgtg
cagcagatcatcgacggcgcggtgctccacggccgtcgcgtgtgcctgatcgggcgctcg
atgctgcgcaacatggagatcgccaccgacctcgagctgctgtcggtgcccgagggcgtc
atggtcgcgctcgacgacgtcgaggaggtgcccgaggacaagctgctcgtcgtgtgcacc
gggtcgcagggcgagccgatggcggcgctgtcgcggatcgcgcgcggcgagcaccgcacg
ttccagatgcgctcgaccgacaccgtcatcctgtccagctcgctcatcccgggcaacgag
cacgccgtgttcggcgtggtcaaccggctgcgccgcgcgggcatccaggtgatcgacaac
cgcaacgccaacgtgcacgtctccgggcacgcgttcgcgggggagctgctgttcctctac
aacgcggtgcgcccgagcaacgtcatgccggtgcacggcgagtggcgccacctgcgcgcc
aacgccgcgctggccgagaagaccggtgtcgcgcacgacgccgtcgtcgtcaccgagaac
gggatcaccgtcgacctcgtcgacggccgcgccgtgatctccgggcgcgtcgaggtgggc
cgggcctacgtcgacggcgtcgccaccggcgacatcgagcagcccacgctggccgaccgc
atcgtgctgggcgagggcggcttcatctccatcaccgtggccatcgacgccaccaccggc
cgggccgtcgccccgccgacgctgtccgggcgcgggttctccgaggacccgaaggcgctg
gaggccgtgctgccgatcgtcgagcaggagctggcccgcaccggcagcgacgggatcgtc
gacacccaccgcgtggcccagcaggtgcgccgggtcgtcgggaagtgggtgggggagacc
taccgccgccgcccgatgatcgtgcccacggtcatcgccgtctga
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