Pseudonocardia broussonetiae: HOP40_25550
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Entry
HOP40_25550 CDS
T07210
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pbro
Pseudonocardia broussonetiae
Pathway
pbro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HOP40_25550 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbro03019
]
HOP40_25550 (recQ)
03400 DNA repair and recombination proteins [BR:
pbro03400
]
HOP40_25550 (recQ)
Enzymes [BR:
pbro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HOP40_25550 (recQ)
Messenger RNA biogenesis [BR:
pbro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HOP40_25550 (recQ)
DNA repair and recombination proteins [BR:
pbro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HOP40_25550 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Umbravirus_LDM
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
QJY50915
UniProt:
A0A6M6JU24
LinkDB
All DBs
Position
5261512..5263341
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AA seq
609 aa
AA seq
DB search
MGSVLPDTAPAPLDVLRRVFGYEAFRGPQQEVVEHVCAGGDALVLMPTGGGKSLCYQVPS
IVRPGTGVVVSPLIALMQDQVDALRNLGVRAGFLNSTQNPDERRDTERAYLDGELDLLYL
APERLRVPSTLSLLGRGRIALFAIDEAHCVAQWGHDFRPDYLALSDLHERWPDVPRIALT
ATATEHTHTEIAQRLNLVDAKHVVASFDRPNIQYRIAPKNEPRRQLLDLLRTEHPGDAGI
VYCLSRKSVEQTAEFLVAQGIPALPYHAGLDAAVRAQNQSRFLREEGVVMVATIAFGMGI
DKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWLAYGLADVVQQRKMIDESEGDRA
HKQRLGQHLDAMLALCETVECRRVRLLDYFGQRSEPCGNCDTCLTPPESWDGTVPAQKIL
STVWRLKKERNQSFGAGHLIDIVTGKRTAKIEQFAHDELTVFGVGTDLSEPEWRAVVRQL
LAQGLLAVQGAYQTFALTEASGEVLRGDREVRMRRDPVKSTRSRSRSARADAPALPAGAA
PVFERLRAWRGATAKEQGVPAYVIFHDAVLREIATRLPSTLGELGTISGIGENKLAKYGQ
GVLGTLTAE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atcgggtccgtgctccccgacaccgcacccgccccgctcgacgtcctgcgccgggtcttc
ggctacgaggcgttccgcggcccgcagcaggaggtcgtcgagcacgtctgcgcgggcggc
gacgcgctggtgctcatgcccaccggcggcggcaagtcgctgtgctaccaggtgccctcg
atcgtccggccgggcacgggcgtggtcgtctccccgctgatcgcgctcatgcaggaccag
gtcgacgccctgcgcaacctcggcgtccgcgccggtttcctcaactccacgcagaacccc
gacgagcgccgcgacaccgagcgcgcctacctcgacggcgagctcgacctgctctacctc
gccccggagcgcctgcgcgtcccctccacgctgtcgctgctgggccgcggcaggatcgcg
ctgttcgccatcgacgaggcgcactgcgtcgcgcagtgggggcacgacttccgccccgac
tacctcgcgctgtccgacctgcacgagcgctggcccgacgtcccccgcatcgcgctcacg
gccaccgccaccgagcacacgcacaccgagatcgcgcagcggctcaacctcgtcgacgcc
aagcacgtcgtcgccagcttcgaccggcccaacatccagtaccggatcgcgccgaagaac
gagccgcgcaggcagctgctcgacctgctgcgcaccgagcaccccggcgatgcggggatc
gtctactgcctctcgcgcaagtccgtggagcagaccgcggagttcctggtggcgcagggc
atcccggcgctgccctaccacgcggggctcgacgcggcggtccgcgcgcagaaccagtcg
cggttcctgcgcgaggagggcgtcgtcatggtggcgacgatcgcgttcggcatgggcatc
gacaagcccgacgtccggttcgtcgcccacctcgacctgcccaagtccgtcgagggctac
taccaggagaccggccgtgccggccgcgacgggctcccgtccacggcgtggctggcctac
ggcctggccgacgtcgtgcagcagcgcaagatgatcgacgagtccgagggcgaccgcgcg
cacaagcagcgcctgggccagcacctcgacgcgatgctcgcgctgtgcgagaccgtggag
tgccgccgcgtgcggctgctcgactacttcggccagcgcagcgagccgtgcggcaactgc
gacacctgcctcaccccgcccgagtcctgggacggcaccgtgcccgcccagaagatcctc
tcgacggtgtggcggctgaagaaggagcgcaaccagtccttcggggccgggcacctcatc
gacatcgtcaccggcaagcgcaccgcgaagatcgagcagttcgcccacgacgagctcacc
gtcttcggagtcggcaccgacctgtccgagcccgagtggcgcgcggtcgtgcgccagctg
ctggcgcaggggctgctcgccgtccagggcgcctaccagacgttcgcgctcaccgaggcc
agcggcgaggtgctgcgcggcgaccgcgaggtgcggatgcgccgcgaccccgtgaagagc
acgcggtcgcggtcgcgctcggcccgcgccgacgcccccgccctgcccgccggggcggct
ccggtgttcgagcgcctgcgcgcctggcgcggggccacggccaaggagcagggcgtgccc
gcctacgtgatcttccacgacgccgtgctgcgcgagatcgccacgcgcctcccgtcgacg
ctgggcgagctgggcacgatcagcgggatcggggagaacaagctcgcgaagtacgggcag
ggcgtgctcggcaccctcaccgcggagtga
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