Pseudonocardia broussonetiae: HOP40_26025
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Entry
HOP40_26025 CDS
T07210
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pbro
Pseudonocardia broussonetiae
Brite
KEGG Orthology (KO) [BR:
pbro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbro03032
]
HOP40_26025
03400 DNA repair and recombination proteins [BR:
pbro03400
]
HOP40_26025
Enzymes [BR:
pbro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HOP40_26025
DNA replication proteins [BR:
pbro03032
]
Prokaryotic type
DNA Topoisomerases
HOP40_26025
DNA repair and recombination proteins [BR:
pbro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HOP40_26025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QJY50928
UniProt:
A0A6M6JSX9
LinkDB
All DBs
Position
complement(5369695..5370732)
Genome browser
AA seq
345 aa
AA seq
DB search
MPAGLVRSDPSGPGFSRRRRGRGFGYVDASGAALTDPGQLARVKGLVIPPAWQDVWISPD
PAGHIQAVGTDAAGRRQYRYHDVWNQARAAVKYDRVLTLGKRMPKVREEIAERLTRTGLD
RDRVLAGAVRMLDVGVFRAGGEEYAPGEDDDEEGTFGLATLRRDHVRLRRGAVEVRYLAK
GGIERTVALRDPLLHRFVGGLLRRRGGGEDLLAHRVGRGWHDVRAEDLNAGVKELVGDVY
TCKDLRTWNATVLAAATLAAAAPEGPPTAERARKRLVKAAVTEVAEHLGNTPTVARASYV
DPRVIERFENGVTIASALRRAGAPAPSDDAGRAVLERAVVRLIEG
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcggggctcgtacgcagtgacccctccggccccgggttctcccggcgccgccgc
gggcgcgggttcggctacgtcgacgcctcgggcgcggcgctgaccgaccccgggcagctc
gcgcgcgtcaagggcctggtgatcccgccggcgtggcaggacgtgtggatcagcccggac
ccggccgggcacatccaggccgtcggcaccgacgcggccgggcgccgccagtaccgctac
cacgacgtctggaaccaggcccgggccgcggtgaagtacgaccgcgtcctgacgctgggc
aagcggatgccgaaggtgcgcgaggagatcgccgaacggctgacccgcaccgggctcgac
cgcgaccgcgtgctggccggcgcggtccggatgctggacgtgggcgtgttccgcgcgggc
ggcgaggagtacgcgccgggggaggacgacgacgaggagggcacgttcggcctggccacc
ctgcgccgcgaccacgtccgcctgcggcgcggcgcggtcgaggtgcgctacctcgccaag
ggcggcatcgagcggacggtcgcgctccgcgaccccctgctgcaccgcttcgtgggcggg
ctgctgcggcgccgcggcggcggggaggacctgctggcccaccgcgtcgggcgcggctgg
cacgacgtgcgcgccgaggacctcaacgccggggtcaaggagctcgtcggcgacgtctac
acctgcaaggacctccgcacctggaacgcgaccgtgctggccgccgccaccctggccgcc
gccgcgcccgagggcccgcccaccgcggagcgcgcccgcaagcggctggtcaaggccgcg
gtcaccgaggtggccgagcacctgggcaacacccccaccgtcgcccgggcgtcctacgtg
gacccccgggtgatcgagcggttcgagaacggggtgacgatcgcgtccgcgctgcgccgt
gcgggcgcccccgccccctccgacgacgccgggcgggcggtgctggagcgtgcggtggtg
cggttgatcgagggctag
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