Pseudonocardia broussonetiae: HOP40_28630
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Entry
HOP40_28630 CDS
T07210
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbro
Pseudonocardia broussonetiae
Pathway
pbro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HOP40_28630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbro03019
]
HOP40_28630
03009 Ribosome biogenesis [BR:
pbro03009
]
HOP40_28630
Enzymes [BR:
pbro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HOP40_28630
Messenger RNA biogenesis [BR:
pbro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HOP40_28630
Ribosome biogenesis [BR:
pbro03009
]
Prokaryotic type
rRNA helicases
HOP40_28630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
AAA_22
Cas3-like_C_2
CMS1
MurB_C
CreS_N
Motif
Other DBs
NCBI-ProteinID:
QJY49236
UniProt:
A0A6M6JPM1
LinkDB
All DBs
Position
complement(5902350..5904080)
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AA seq
576 aa
AA seq
DB search
MSELDLDLPTFSDLPLRDELLAVVDELGYTHPSPIQAEAITPLVEGRDLLGQAATGTGKT
AAFALPMLERMADQRPSRERGAAPFGLILAPTRELALQVSEAVQRYGAGLHARVLTVYGG
APVGPQLKALHQGVDVVVATPGRAIDLMNRGALKLHDLEVVVLDEADEMLDMGFVEDIET
LLDATPDTRQAVLFSATMPRRIETLAQKYLREPVTVRIRREEVAEGEAPKVRQTAYLVPR
THTTAALGRVLEAERPTAAIVFCRTRLDVDAVTETLTGRGLRAEALHGGMDQEHRTRVVE
RLRSGRTELLVATDVAARGLDIDLLTHVVNHDVPQSSEAYVHRIGRVGRAGREGVAITLA
PPSKVYALRNVERLTGQPIEMAAVPTAADLRAARLERTREALREALAEMSADDDGVAAMV
AGLAEEFDAADVATAAIRLMAAAAGTPDDGEDIPVVSAPRSGSRDARGPRDARDSRGRGG
AAGTRAPKAGTTRLFVNAGRASGVRPQDIVGALANESNLTGRDIGAIQIHERHALVEIPE
HAADDVLRSLRGTTTLKGRRANVRRDRGFASAGSRD
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgagctcgacctcgacctgcccaccttctccgacctgccgctgcgcgacgagctc
ctcgccgtcgtcgacgagctgggctacacccacccgagccccatccaggccgaggcgatc
acgcccctggtcgagggccgtgacctgctgggccaggcggccaccggcaccggcaagacg
gcggccttcgcgctgccgatgctggagcgcatggccgaccagcgcccctcccgcgagcgc
ggcgccgccccgttcggcctgatcctggcccccacccgcgagctcgcgctgcaggtgtcc
gaggccgtccagcgctacggcgccggcctgcacgcccgcgtgctcaccgtctacggcggc
gcgccggtcggcccgcagctcaaggcgctgcaccagggcgtcgacgtcgtcgtcgccacc
ccgggccgcgccatcgacctgatgaaccgcggcgcgctcaagctgcacgacctcgaggtc
gtcgtcctggacgaggccgacgagatgctcgacatgggcttcgtcgaggacatcgagacg
ctgctcgacgccaccccggacacccggcaggcggtgctgttcagcgccaccatgccgcgg
cgcatcgagacgctggcgcagaagtacctgcgcgagccggtcacggtgcggatccgccgc
gaggaggtcgcggagggcgaggcccccaaggtccgccagaccgcctacctcgtgccccgc
acccacaccaccgccgcgctgggtcgcgtcctggaggccgagcgccccacggccgcgatc
gtcttctgccgcacccggctcgacgtcgacgcggtcaccgagacgctcaccggccgcggc
ctgcgcgccgaggcgctgcacggcggcatggaccaggagcaccgcacccgcgtggtcgag
cggctgcgcagcgggcgcaccgagctgctcgtcgccaccgacgtcgcggcccgcggcctc
gacatcgacctgctcacccacgtcgtcaaccacgacgtgccgcagagctccgaggcctac
gtgcaccgcatcgggcgcgtcgggcgggccgggcgcgagggcgtcgcgatcacgctggcg
ccgccgtcgaaggtctacgcgctgcgcaacgtggagcggctcaccggccagcccatcgag
atggccgccgtccccaccgcggccgatctgcgcgccgcccgcctcgagcgcacccgtgag
gcgctgcgcgaggcgctggccgagatgtcggccgacgacgacggcgtggccgccatggtc
gccgggctggccgaggagttcgacgccgccgacgtcgcgaccgccgcgatccggctgatg
gccgccgccgcgggcacgcccgacgacggcgaggacatcccggtggtcagcgctccgcgc
tccggctcgcgcgacgcgcggggtccgcgcgacgcccgcgactcccggggccgcggcggc
gccgcgggcacccgggcgccgaaggccggcaccacccggctgttcgtcaacgccggccgc
gcgagcggcgtgcgcccgcaggacatcgtgggcgcgctggccaacgagtcgaacctgacg
ggccgcgacatcggcgccatccagatccacgagcggcacgcgctcgtcgagatcccggag
cacgccgccgacgacgtgctgcgcagcctgcgcggcacgacgacgctcaagggccgccgc
gccaacgtgcgccgcgaccgcggcttcgcctccgccggcagcagggactag
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