Plasmodium brasilianum: 92372030
Help
Entry
92372030 CDS
T10352
Symbol
MKS88_003943
Name
(RefSeq) ATP-dependent RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pbrs Plasmodium brasilianum
Pathway
pbrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
92372030 (MKS88_003943)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbrs03019
]
92372030 (MKS88_003943)
03041 Spliceosome [BR:
pbrs03041
]
92372030 (MKS88_003943)
03009 Ribosome biogenesis [BR:
pbrs03009
]
92372030 (MKS88_003943)
03016 Transfer RNA biogenesis [BR:
pbrs03016
]
92372030 (MKS88_003943)
Enzymes [BR:
pbrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
92372030 (MKS88_003943)
Messenger RNA biogenesis [BR:
pbrs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
92372030 (MKS88_003943)
Spliceosome [BR:
pbrs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
92372030 (MKS88_003943)
Complex C
U4/U6.U5 tri-SnRNP related factors
92372030 (MKS88_003943)
Ribosome biogenesis [BR:
pbrs03009
]
Eukaryotic type
Pre-60S particles
Helicases
92372030 (MKS88_003943)
Transfer RNA biogenesis [BR:
pbrs03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
92372030 (MKS88_003943)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
Motif
Other DBs
NCBI-GeneID:
92372030
NCBI-ProteinID:
XP_067072751
LinkDB
All DBs
Position
11:complement(2281494..2285858)
Genome browser
AA seq
1414 aa
AA seq
DB search
MSKIIDDLFNVFEENDIEENILIKNEEDRIGNNILSVEKNDKEESNNIKNKEEYTETKQS
DKIIKEMNANKKNRKEEYHNNNEDKLSNTPQVNYKINIENLINKKRKEDKLIKNQVREEI
YNDIQNFDGTTNNVNKKVRKISEEDKNRKKKEKNNTNNSKVEEILIENSKTINNDDVLVL
EEFGSDINCIHKCVRPKSYVHNELSESIIPARTYKFELDTFQKKSIECLERNESVLVSAH
TSAGKTVIAEYAIALGLRDKQRVIYTSPIKALSNQKYRDLSEEFKDVGLITGDISINPEA
SIIVMTTEILRSMLYRGSSLTKEVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRLIFL
SATIPNGIQFAEWVSSIKSQACHIVYTDYRPTPLQHYIFPTSSESVFLICDENKEFKRDN
FIKAVNAIKEKMNMSEDNLQRNNNINKYAKKMRKNTYDIEKIVQMCHSRNYTPLIIFAFS
KKECEVNATSMHKVDLTDETEKEVIKELYENAIQILADDDRALPQVQFILPLLLRGIGIH
HGGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLKKFDGLEKRLITSG
EYIQMAGRAGRRGLDDRGIVIIMLDSPLHWKEAEKLFVGEANRLVSQFHLGYNMILNLLR
IEGITPEFMIERSFIQYQMKKNLFQKILAKKRVEEKIKEIFNTLTNIYLDENYQEISKTN
LLKNIMMNYYKRVATKKNSSQTLADTESTAPNMADHNMAQSLSHNNNGHNEGGNSQENQK
VHVLHGKESVSDTTTTSCNALCSNDNKNLDDENKNYAADNNNNDDSNFNEELKKYGTIYS
YISNYYIITSKLVELGESYRSILTSKKNITPYLALGRLIYLVEEDQKWGWCICIEGRVIE
GKNRGGKRSTESSSYSNNNNNYNNNSNNSYSNNYSNGDTFHKHSYADGNDPGDMLVVDCL
VPYNESKKRKRTQYDDDENGSEDRGTADRDIGNNENENDEREYIPPSDRLKAKWKFMCFH
IKCIYQISAVVLSIDKPFDKKSEEEIENVRLKYNTMVSCLKGEKNIPVISPYQMDIKDEA
FLKIVKNISYHENVLKKNKLLNNKNLNKYYHMYNKYVALQFEKNILESNIEKCRFIVLKK
ELKNMLILLESLNYIEISHNLENIKDENEVKTIQNVARTSEQSDISLTNQQNIFNTNEQT
VGSTDDRLIYQNHNSDSKNNHGGSKNANVNNNMGEEKNYIVTMKGQIASAILSVDELVIS
ELFFSNFFSKYNFDYICAFLSCFVYDESTNKDITINDPILVEGYQQIIKTATSVANKMNH
CGMNINLKDYLDKFKSSIMPIVLLWARGHSFMEILTDSQIYEGSIIRTLRRLDELLRQMI
CAFRGINNDNMCEILTAATKKLRRGIPFSPSLYL
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaattattgacgacttatttaacgtttttgaggaaaacgatatagaagaaaat
attttgataaaaaatgaagaggacagaatagggaataacatcttatcggtggagaagaat
gacaaggaggaaagtaataacataaaaaataaagaagagtatactgaaacaaaacagtct
gataaaataataaaagaaatgaatgctaataagaaaaataggaaagaagaatatcacaat
aataatgaagataagttatcaaatacaccacaagtaaattacaaaataaatattgaaaat
ttaattaataagaaaagaaaagaggataaattgatcaaaaatcaagttagagaagaaata
tataatgatatacaaaattttgatggaactactaataatgtaaataagaaagtaagaaaa
atatctgaagaagataagaatagaaaaaaaaaggaaaaaaataatacaaataactcaaaa
gtagaagagatactaattgaaaatagtaaaacaataaataatgatgatgttctagtttta
gaagaatttggtagtgatattaattgtattcataagtgtgtaagacccaaaagttatgta
cataatgaactaagtgaatccataatcccagctagaacgtataaattcgagttagataca
tttcaaaaaaagtcaatagaatgtttagaaagaaatgaaagcgttctagtatcagctcat
acctctgcaggaaaaacagtaatagctgaatatgcaatagccttaggtctaagagataaa
caacgcgttatttatactagcccaattaaagcattgagtaatcaaaaatatagagactta
agtgaagaatttaaagatgtcggtttaattacaggagatatttctataaatcctgaagcc
tctataattgttatgaccacagaaatattacgatccatgttatatagaggatcttctcta
acaaaagaagtaaaatgggttatatttgatgaaattcattatatgagagatagagacaga
ggggttatatgggaagagacgattattttattacctttaatggttcgactcattttttta
agtgcaacaataccgaacggaattcagtttgctgaatgggttagcagtattaaaagtcaa
gcttgtcatattgtatatacagattatagacccaccccattacaacattatatttttcct
acatctagtgaaagtgtttttttaatatgtgatgaaaataaagaatttaaaagagataat
tttatcaaagctgttaatgctattaaggaaaaaatgaacatgtcagaagataatttacaa
aggaataataatattaataagtacgctaaaaaaatgagaaaaaatacttatgatattgaa
aaaattgttcagatgtgtcactcccgtaattatacccctttaattatttttgccttttca
aaaaaggaatgtgaagtaaatgcaactagcatgcataaagtggatttaacagatgaaaca
gaaaaagaagtaataaaagagttatatgaaaatgcaatacaaattttagctgatgatgac
cgtgcattaccacaggtccaatttattttacccttactgttaagaggaattggaatacac
catggaggtttattacctatcattaaagagattatcgaaataatgtttcaagagtctttg
ttaaaagttttatttagtacagaaactttttctatgggcataaatatgccagctaaaact
gttgtctttacttctttaaaaaaatttgatggcttagaaaaaagattaataacatctgga
gaatatattcaaatggctggaagagctggtaggagaggattagatgatagaggaattgtc
atcattatgttagatagccctcttcattggaaagaagcagaaaaattgtttgtaggtgaa
gccaatagattagttagtcagttccatctaggatataatatgatattaaatttattaaga
attgaaggtattaccccagaatttatgattgaaaggtcatttattcaatatcaaatgaaa
aaaaatctttttcaaaaaattttagctaaaaaaagagtagaagaaaaaattaaagaaata
tttaacactttaacaaatatttacctagacgaaaattaccaagaaataagcaaaacaaat
cttttaaaaaatattatgatgaattattacaaaagagtagcaacaaaaaaaaatagcagt
caaactttagcagacacggaaagtacagcacctaatatggcggaccacaatatggctcag
tcactctcacataataataatgggcataatgaaggaggaaattcacaagaaaaccaaaaa
gtacatgtacttcatggtaaggagagtgtaagtgatactacaaccacctcctgcaatgca
ctctgcagtaatgacaacaaaaatttggatgacgaaaacaaaaattatgctgctgataat
aataataatgatgacagtaattttaacgaggagctaaaaaagtacggtaccatatattct
tatatatctaattattatataatcacaagtaaattagtagaactgggggagtcctacagg
tctatattaacatcgaagaaaaacataaccccctatttagcccttggcaggttgatatac
cttgttgaggaagaccagaaatgggggtggtgcatttgcatagaaggaagagtcattgaa
gggaaaaacaggggcggaaagaggagcacagaaagtagtagttatagtaataacaataat
aattacaataataacagtaacaacagttatagcaataattacagtaatggagatactttt
cataaacatagctacgcagatgggaatgatccgggagatatgttagttgttgattgtctc
gttccctataatgaaagtaaaaaaagaaagcgaacgcagtatgatgacgatgaaaatgga
agtgaagacagaggtacagctgacagagacattggtaacaatgaaaacgagaatgacgag
agagaatatattccaccaagtgatagattaaaagcaaaatggaaatttatgtgttttcat
attaaatgcatttatcaaatatcagcagtcgtattaagcatagacaagccatttgataaa
aaaagtgaagaagaaattgaaaacgttagattgaaatataacaccatggtcagttgttta
aaaggagaaaaaaatattccagttattagtccctatcaaatggatattaaagatgaggca
tttttaaaaattgtaaaaaatataagttatcatgaaaatgtattaaaaaaaaataaatta
ttaaataataaaaacttaaataaatattatcatatgtataataagtatgttgccttacaa
tttgaaaaaaacattttagagtcgaacattgaaaaatgccgatttattgttcttaaaaaa
gaattaaaaaatatgctcattttgttggagagtttaaattatattgaaatttcgcacaat
ttagaaaatataaaggatgaaaatgaagtaaaaactattcagaatgttgctaggacgagt
gagcaaagtgatataagcctgacaaatcagcaaaatattttcaatacaaatgaacaaact
gttggttccacagatgatcgcttaatctaccaaaatcacaatagtgatagcaaaaacaac
cacggtggtagtaaaaatgccaatgttaataataacatgggtgaggaaaaaaattacata
gttactatgaaaggacaaatagcgagcgcaattttaagtgttgatgaattagtaatatca
gaattgttcttttccaattttttcagtaaatataattttgattatatatgtgctttccta
tcatgttttgtatatgatgaatccacaaataaagacatcacaattaatgaccccatacta
gtggaggggtatcagcaaatcataaaaactgcaaccagtgtagcaaataaaatgaatcac
tgtggaatgaatataaatttaaaagattaccttgataaatttaagtcctccattatgcct
atcgttttattatgggctcgtgggcactcatttatggaaattttaacggactcacaaatt
tacgaagggtctattatacgaaccctaaggcgtttggacgaactgctaaggcaaatgatc
tgcgcattcagaggaattaataatgacaacatgtgcgaaattttaacagctgcaactaaa
aagttgagacgcggtatcccattctcgccctctttgtatttataa
DBGET
integrated database retrieval system
