Plasmodium brasilianum: 92373835
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Entry
92373835 CDS
T10352
Symbol
MKS88_005748
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pbrs Plasmodium brasilianum
Pathway
pbrs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbrs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
92373835 (MKS88_005748)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbrs03019
]
92373835 (MKS88_005748)
03041 Spliceosome [BR:
pbrs03041
]
92373835 (MKS88_005748)
Messenger RNA biogenesis [BR:
pbrs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
92373835 (MKS88_005748)
Spliceosome [BR:
pbrs03041
]
Complex B
Other components
Prp19-related factors
92373835 (MKS88_005748)
Complex C
92373835 (MKS88_005748)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
TPR_2
HAT_PRP39_N
BTB_SANBR
TPR_ELP1
Motif
Other DBs
NCBI-GeneID:
92373835
NCBI-ProteinID:
XP_067070954
LinkDB
All DBs
Position
14:complement(2551356..2554975)
Genome browser
AA seq
1008 aa
AA seq
DB search
MELYGELYDYDDLFFNENNVTSREEAFYEEKDYFVDEMNYSNKFINSYKNTENENYLKSI
EIDIKSNLEKVSTKYLFLYINKFKEKNIKKENNLYVLNMYDIHLKKDKLNVLETENNIVE
YCLTELINGGRKSNVKGGLKKGIMCYDSTVQLGCSHIGNEDDEEEHEQEKLGYEEEEQDY
DVGEVKARGYGKEQSSDEDENNSSNGSARTKEYYLRRIYQVVLKYFPFSFKLWYNYIRDS
IEMIKDVYYDNRREYEQVNAIFEKCLLYMYHFKSIYIMYIQFLYIQRKVQKIREVFNRSL
QNVFLNQHEDLWFYQLEYNEKINNKLINYEYIKRYITIYPEQVIFLFDHYVKYKMYKHAI
GTFFYILNCEEETLDLGNKSKYDLYKEIFNLISSAKVLNNDVMEILKKNINIFKNYENVT
SIFILLANNYVYEGRWNKAMDSYEEGISECYTVNDFSILFENYIETLKVLIDLKINQQEE
KRNTSTSDLYVEEEKEAIDNELISEGIKPNDDFVIDLYMEKINYLLDVRKIFIADIKLKN
NKNNVYIWLSKIDAVANDTDKVDLFNKCLIHFEHNEYIGRLSDVYISYAYYYYNRNKYDE
SVKVFHRAIKEKNFKNVNEMANIFCSWVELELLQANYKEALNVARLAIDIGRGKSFKGKA
ENGTTFNVHNTSRSGENDAISIYSRGLRDSTDGDVLAHTEFNLLNSTKLMCLILDMEINY
GTVETSISMFDVLYHAKSITVKMVLSFANFLYTHKYFNECFKIYEKAISIFHYPYLYPIY
ANYINKYIERYKDKNISYVRELFKQAIYGIDNKTYIPKEFAKYIFFMYALFEENYGFLKN
SLSIYKEAIPFLEEKDKATFYKMFIWKISKSYGVHKAREAFEEAIQTLKDDDAREICLLY
IDMEYKLNEYERVRALYIYTAQFTNPLAYSKFYQDWREFEALHGNEHTFRDMIRIKRSVL
SIFTSSHRGVKEIEKDENSNLNVIENTKRILQEMIENEERLQKKIKNG
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggaactgtacggagagttgtacgactatgatgatttattttttaacgagaacaatgtt
acctcgagggaggaagcgttttatgaagaaaaagattattttgtcgatgagatgaattac
agtaataagtttataaacagttacaaaaatacagaaaatgagaattatttgaaaagtatt
gaaatagatataaagagcaatttagaaaaagtgtctacaaaatacttatttttatatatt
aataaatttaaggaaaagaatataaagaaggaaaacaatttgtatgttttaaatatgtac
gatatacatttaaaaaaagataagctcaacgtgttggaaacagagaacaatatcgtggag
tactgtttgacagagttaataaatggaggtagaaagagtaacgtaaaggggggtctaaaa
aagggcatcatgtgttatgatagtactgtccagttagggtgttcacatattggaaatgag
gatgatgaggaggagcacgaacaggaaaagctaggttatgaggaggaagaacaggattat
gatgtgggtgaggttaaagcacgtgggtatggtaaagagcagagcagcgatgaagatgaa
aataacagtagcaatggcagtgcgcgcacgaaggagtactacttgcgcagaatttaccaa
gttgttctgaagtacttcccgttcagcttcaagctgtggtataactacataagagatagc
atagagatgataaaggatgtctattacgataacagaagagaatatgaacaagtgaatgcg
atttttgaaaagtgtctattatatatgtaccattttaagtccatctatattatgtacatt
caatttttatatattcaaaggaaagttcaaaagataagagaagtattcaatcgctcttta
cagaatgtttttttaaatcaacatgaagatttatggttttatcaattagaatataatgag
aaaataaacaataagttaattaattatgaatatattaaaagatatataacaatttatcct
gaacaagtcatatttttatttgatcattatgtaaaatataaaatgtataaacatgcaata
ggtacttttttttatatacttaattgtgaagaggagacgttagatttaggaaataaatca
aaatatgatttatataaagaaatatttaatttaattagttcagctaaagttttaaataat
gacgttatggaaattttgaaaaaaaatataaatatttttaaaaattatgaaaatgttaca
tctattttcattctattagcaaataattatgtgtacgagggtagatggaataaggctatg
gattcatatgaagaggggatatcagaatgttacacagttaatgacttttcaattcttttt
gaaaactacattgaaacgttgaaggtgttgatagatttgaaaataaatcaacaagaggaa
aaaaggaatactagcacaagtgatttatatgttgaagaggagaaagaagcaatagacaat
gaactaatttcagagggaataaaaccaaatgatgattttgtaatcgatttgtatatggaa
aaaataaactaccttttggatgtaaggaaaatatttatagctgatattaaactgaaaaac
aataaaaataatgtgtacatatggttaagcaaaattgatgcagttgcaaatgatactgat
aaagtagatctcttcaacaagtgtttaatacattttgagcataatgaatacatagggaga
ttgagtgatgtatatattagttatgcatactactattataacaggaacaaatatgacgaa
tctgtaaaggttttccatagagctataaaagaaaaaaatttcaaaaatgtcaacgaaatg
gcaaatatattttgctcatgggttgaactagaattactgcaagcaaattacaaggaagcg
ttgaatgtagccaggttggctattgatattggcagaggaaaatcctttaaagggaaagca
gaaaatggaactacatttaatgtgcacaatactagtagaagcggggaaaacgatgcaatc
agtatttacagtagaggtctacgggacagtactgatggcgatgtgctcgcacataccgag
tttaaccttctaaactcaaccaaattgatgtgcttaattcttgatatggaaataaattac
ggcacagttgaaacgtccataagcatgtttgatgttttgtatcatgcaaaaagtattact
gtgaaaatggttttgtcctttgctaattttctatacacacataaatactttaatgaatgt
tttaaaatttacgagaaagctatttctatatttcactacccttatttataccccatttat
gccaattatattaataaatacattgagagatataaagacaaaaatatttcatatgtgcgt
gaactgtttaaacaagctatttatggtattgacaacaaaacgtatattccaaaagaattt
gctaagtatatttttttcatgtatgctttatttgaagaaaattatggctttttgaagaat
tcactgagtatttataaagaggctattccctttctggaggaaaaggacaaagctacattt
tataagatgttcatttggaagatatccaaatcctatggagttcacaaagccagggaagca
tttgaggaggctattcaaacgctaaaggatgacgatgcgagagaaatttgtttgttatat
attgacatggaatataagttaaacgaatatgagcgtgtcagggcgctttacatttacacg
gctcagtttactaatccattggcctattcgaagttttaccaggattggagagaatttgaa
gcattgcatggaaacgagcacaccttcagagacatgataagaataaaaagaagcgtccta
agcatatttacgagttcgcacaggggagttaaggagatagaaaaagacgaaaactcgaac
ttgaacgtaatagaaaacacgaagaggatactgcaggaaatgattgaaaatgaagagagg
cttcaaaaaaaaattaaaaatggctaa
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