KEGG   Pendulispora brunnea: LZC95_24555
Entry
LZC95_24555       CDS       T10972                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pbru  Pendulispora brunnea
Pathway
pbru03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pbru00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LZC95_24555 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pbru03400]
    LZC95_24555 (ligD)
Enzymes [BR:pbru01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LZC95_24555 (ligD)
DNA repair and recombination proteins [BR:pbru03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LZC95_24555 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: WXA99974
LinkDB
Position
6362127..6364784
AA seq 885 aa
MGDKSFDKLEKYRNKRNFEVTPEPDGTEKTSSHRSRSPVKKTTSSRTKDVPADAIPTSPT
AVATGAGVFVIQKHDARRLHYDLRIELGGTMMSWAVPKGPSYDPNVKRLAVEVEDHPMDY
NDFEGRIPDGEYGAGDVLIWDRGTYEPAPMNGVPTAIKGNQAELLAWMREKGHFHLRFSG
EKLHGGWHLVRTKRRGETKESKPQWLFFKAHDEMANPELDIVTSRPESVVSGLRATRGPL
RASASPIAQSARELLLAIGEVSKATNGPLVGDGSLYLFEVKFDGYRLLAGKAGNDVRLFS
RKSNDWTDRFALIASSIARLPAREVVIDGEACAVDDEGRPSFEALQRWLGGDTKSAQIAF
AAFDLLWLDGRDLRKSPIEERRELLKALLQGAKPPLSFSSAMEGKASDLLAAAKRAGLEG
LIAKRKGSLYTPGNNANWVKLKFEQRQDAVVCGYLPLKGAEVVGALLVAVHDSRGGDLVY
AGRVGTGFDDRLRARLAEQLDAMRVATPKMLNVPKLPKPRFCEPRLVCEVGLGEWTSERI
MRFPRFIAMREDKSPEECIREDAVGHASPRPPPVREVKETSVKLANPTKILYPRDGITKQ
DVFDYYTDIAPVMLPHLQGRPIHMQRWPHGIDDEEWFQHRLPPKAPDFVRRIAFLRDKAP
WYKLNEKGPIKERIVVDNLETLQWLANLAALTLHQWASHAPPEATSTTQVHNALAQADYV
VIDLDPGEATRWEEIIQVAHAVRTLLEALSLTSVVKTSGKRGLHIVIPLARGPSHEDAVH
FAEQVARAVAKVMPSISTVERIKEKRRGRLYVDYGQNGGGRTIVCPYTLRAADRAPVSAP
LRWEEVTNALDPRAFNLRTMRARIEQYGDLYAPCLEPTQTLPAVS
NT seq 2658 nt   +upstreamnt  +downstreamnt
gtgggtgataagtcgttcgataagctcgaaaagtaccgcaacaagcgaaatttcgaggta
acgcccgagccagatggcaccgagaagacatcgtcccatcggtcgcggtctcccgtaaag
aaaacaacctcatctcgaaccaaggacgttccggctgacgcgattccgacaagtccgaca
gctgtcgcgacgggggcaggcgtttttgtcattcagaagcacgacgcgcggcgtcttcat
tacgatctgcgcatcgagctggggggtacgatgatgagctgggccgtccccaagggcccg
tcgtacgatcccaacgtgaagcggctggccgtcgaggtggaggaccacccgatggactac
aacgacttcgaagggcgcattccggacggcgaatacggcgccggcgacgttctcatctgg
gaccgtggcacctacgagcccgcgccgatgaacggcgttccgacggccatcaagggcaat
caggccgagcttctggcgtggatgcgcgagaaggggcactttcacctgcgcttttccggg
gaaaagctgcatggcgggtggcacctggtgcgcacgaaacgccgcggggaaacgaaggag
agcaaaccacagtggctctttttcaaggcccacgacgagatggccaatccggaattggac
atcgtgaccagccggcccgaatccgtggtgagcggtcttcgcgccacgcgcgggccgctg
cgcgcgtcggcgtccccgatagcgcaaagtgcgcgagagcttttgctcgcaatcggcgag
gtgtcgaaggcgacgaacgggccactggtcggcgacgggtcgctctacctcttcgaggtg
aagttcgatgggtatcggctgctggcgggaaaagccggaaatgacgtgcgcctgttctcg
cgcaaatcgaatgactggaccgaccgatttgcgctgatcgcgtcgtccatcgcgcgtctc
cctgcacgcgaggtggtcatcgatggggaagcctgcgcggtggacgacgaggggcgcccg
tctttcgaggcgctgcagcggtggctggggggcgatacgaagagcgcgcaaattgcattt
gcggcgttcgatctgctgtggctcgacggacgcgatctgcgaaagagtccgatcgaggag
cgtcgagagctgctgaaggcgctgcttcagggggcgaaaccgccgctgtcgttttcatcg
gccatggagggcaaggcgtcggatcttttggcggcggcgaaacgcgcgggcctcgagggg
ctcatcgcgaagcgtaaggggtcgctgtacacgccagggaacaatgccaattgggtgaag
ctgaagttcgagcagcggcaggacgcggtggtctgtgggtaccttccgctgaagggcgcc
gaggtggtgggggcgcttttggtggcggttcatgattcgaggggcggcgatttggtctac
gcgggccgcgtcggcacgggcttcgacgatcggctgcgtgcgcgtttggccgagcagctc
gatgcgatgcgcgtggcgacaccgaaaatgctcaatgtgccgaagctgccgaagccgcgc
ttctgcgagccacgcctcgtgtgcgaggtggggctgggcgagtggacgagtgagcgcatc
atgcgctttccgcgcttcatcgccatgcgcgaagacaagtcgcccgaggagtgcattcgg
gaggatgcggttgggcatgcgtcccctcgcccgccgcccgtccgtgaagtcaaagagacg
agcgtgaagctcgcgaacccgacgaagatcctttacccgcgcgatggcatcaccaagcag
gacgtcttcgattactacacggatatcgccccggtgatgcttccgcacctgcagggccgg
ccgattcacatgcagcgctggccgcacggcatcgacgacgaagaatggttccagcaccgg
ctgccgccgaaagcaccggatttcgtccggcgcatcgcgttccttcgcgacaaggcgcct
tggtacaaactgaacgaaaagggtcccatcaaagagcgcatcgtcgtcgacaatctggag
acgctgcaatggctcgccaatctggccgcgctcaccctgcatcaatgggcaagccacgcc
ccgccggaggcgacgagcacgacccaagtgcacaatgcgctcgcccaagccgattacgtg
gtcatcgatctcgatccgggcgaggccacccgctgggaagagatcatccaggtggcccat
gccgtgcgcacgttgctcgaggcgctctcgctgaccagcgtggtaaaaaccagcggcaaa
cgcggtctgcacatcgtcattcccctcgcccgcggcccttcgcacgaggatgccgtgcac
ttcgccgagcaagtcgcccgcgccgtcgccaaggtgatgccgtccatctcgacggtggag
cgcatcaaggaaaagcgccgcggccgtctctacgtcgactacggccaaaacggcggcggc
cgcaccatcgtgtgcccgtatacgttgcgcgcggccgatcgcgcaccggtttcggcgccg
ctgcgctgggaagaagtcaccaacgcgctggaccctcgcgctttcaacctgcggaccatg
cgcgcgcgcatcgagcaatacggcgacctctacgccccttgcctcgagcccacgcaaacg
cttccggcggtcagttag

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