KEGG   Petaurus breviceps papuanus (sugar glider): 138173318
Entry
138173318         CDS       T10505                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pbrv  Petaurus breviceps papuanus (sugar glider)
Pathway
pbrv03030  DNA replication
pbrv03410  Base excision repair
pbrv03420  Nucleotide excision repair
pbrv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pbrv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    138173318 (LIG1)
   03410 Base excision repair
    138173318 (LIG1)
   03420 Nucleotide excision repair
    138173318 (LIG1)
   03430 Mismatch repair
    138173318 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pbrv03032]
    138173318 (LIG1)
   03400 DNA repair and recombination proteins [BR:pbrv03400]
    138173318 (LIG1)
Enzymes [BR:pbrv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     138173318 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     138173318 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     138173318 (LIG1)
DNA replication proteins [BR:pbrv03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    138173318 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     138173318 (LIG1)
DNA repair and recombination proteins [BR:pbrv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     138173318 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     138173318 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     138173318 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR PucR SR-25
Other DBs
NCBI-GeneID: 138173318
NCBI-ProteinID: XP_068959410
LinkDB
Position
Unknown
AA seq 892 aa
MQRSITSFFQPMSGDKEKRQEEPLKSSREKEPTSKAALKERNAVESDNESPMKRPVRKVA
RVLGSEGEEEDEEAAPATPGQQEPAILSPATSSASSSPSPSDSSPSSISPAGIPKRRTAR
KQIQKHKLPEDCKDSEPKRCKREGGENTQGRNPEQPTPIPETQPAAEASGKAPESQSTTE
EAGRGPELQAPTRAPKAFSSFFTPRKPAAAKQAPKEAEAGKAVEETSRMSPDPASYNPSK
SSYHPVDDACWSPGQRVPYLVVARTFEKIEEVSARLQMVETLSNLLRSVAALSPADLLPV
LYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLEAIRAEVAEKGDVGLVVEASRSTQ
RTMLPLPPLTAAGVLSKLRDIARLTGNASTSKKIDIIKCLFVACRHSEARFIARALSGRL
RLGLAEQSVLAALAQAMALTPPGQEFPPAVVDAGTGKSADARKTWLEKKGMVLKQTFCEV
PDLDLIVPALLEHGLDQLPQHCQLTPGVPLKPMLAHPTRGIGEVLKRFEESAFTCEYKYD
GQRAQIHVLANGDVKIFSRNQEDNTGRYPDVISRIPKIKHPSVVSCILDSEAVAWNRAKK
QIQPFQVLSTRKRKEVEESEIQVQVCLYAFDLIYLNGQSLIREPLSRRRQLLRENFIETE
GEFVFATSLDTEDTEQIADFLEQSVKDSCEGLMVKTLDTNATYEIAKRSRNWLKLKKDYL
EGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAFDEDSEEFQAICKLGTGFSDEQLEEHFQ
SLQALVIPAPRSYVRAEGAVPPDHWLEPTTVWEVKCADLSVSPIYSAARGLVENDKGISL
RFPRFVQVRHDKKPEEATTSAEVAYLYKKQQQIQNQQDSDSNASDFEPEDFY
NT seq 2679 nt   +upstreamnt  +downstreamnt
atgcagcgatccataacgtcgtttttccagcctatgagtggggataaagaaaagaggcag
gaggagcccctcaaaagcagcagggagaaagagcccacctccaaggctgccctaaaggag
aggaatgccgtagagtctgacaatgagtcccccatgaagaggcctgtgaggaaagtggcc
cgagtcctggggagcgaaggcgaggaggaggacgaggaggcggccccagccacgcccgga
caacaggagccagccatcctctccccggccacttcttcagccagctccagcccttccccc
tcagactcctcacccagcagcatctccccagcagggatccccaagcgtcggacagctcgg
aaacagatacagaaacacaagctgccagaggactgtaaggacagtgagcccaagaggtgt
aagagagagggaggggagaacacacaaggaagaaacccagagcagcccacaccgatccca
gagacacagccggccgcggaggcctctggcaaggccccagagtcacagagcaccactgag
gaggcagggagaggcccggagctccaggcgcccacccgggcccccaaggccttcagcagc
ttctttaccccccgaaaaccagcagccgcaaagcaagccccaaaggaggcagaggcgggg
aaggcagtggaggagacatccaggatgtccccagacccagcctcctacaacccttctaag
agcagctatcaccctgtggacgatgcctgctggagcccaggacagagggtcccctacctt
gtcgttgctcggacatttgagaaaattgaggaagtctctgctcggctccagatggtggaa
actctgagcaaccttctccgttcagtggctgccctgtctcccgcagacctgctccctgtc
ctctacctgagtctgaaccgactggggcccccccagcaaggcctagagctcggcgtgggg
gatggcgtgctcctcaaagcggtggcccaagctacggggcggcagctggaagccatacgg
gccgaggtggcagaaaagggggacgtggggctggtggtggaggccagccgcagcacccag
cgtaccatgctgcctctgccacccctgacggcggccggagtcctgagcaagctccgagac
atcgcccgcctcacgggcaatgcttccacctcaaagaagattgacatcatcaaatgcctg
ttcgtcgcctgtcgccactcggaggcccgcttcatcgccagggccctgagtgggcggctg
cgcctcggccttgccgagcagtcagtcctggcggcacttgcccaggccatggccctcaca
ccccctggccaagagttccccccagctgtggtagatgctgggacaggcaagtcagcggat
gccaggaagacctggctggagaagaagggcatggtcctgaagcagaccttctgcgaggtg
cctgacctggacctgattgtccctgccctgctggagcacgggttggaccagctgccccag
cattgccagctgaccccaggggtgcccctgaagcccatgctggcccaccccacccgcggc
attggggaggtgctgaagcggtttgaggagtctgccttcacgtgtgaatataagtatgat
gggcagagggcacagatccacgtcctggcaaatggggacgtgaagatatttagccggaac
caagaggataacactggccgatacccggacgtcatcagccgcatcccgaagataaagcat
ccctcggtcgtctcctgcatcctggactcggaggctgtggcctggaacagggcaaagaag
caaattcagcccttccaggtgctcagcacccgcaaacgcaaggaggtagaggagtccgag
atccaagtccaagtgtgcctgtatgcctttgacctcatctacctcaatgggcagtccctg
atccgggagccactgtcccggaggcggcagctgctccgggagaacttcatcgagacggag
ggtgagtttgtttttgccacgtcactggacacggaggacactgagcagatcgccgacttc
ctggagcagtccgtgaaagattcctgtgagggcctgatggtgaagacccttgacacgaat
gccacgtatgagattgccaagagatcccgtaactggctcaagctgaagaaggactatttg
gaaggtgttggggacactctggacctggtggtaattggggcctatttgggccggggaaaa
cgagccggacgctatgggggctttctcctggctgcctttgatgaggacagtgaagagttc
caggccatttgcaagctgggcacgggtttcagtgatgaacaattagaggaacatttccag
agcctccaggccctcgtgattcctgctcctcgttcctatgtccgggcagaaggggctgta
ccccctgaccactggctagaaccaaccaccgtatgggaggttaaatgtgctgatctctct
gtctccccaatttattcagcagcccgagggttggtggagaatgacaagggcatctcccta
cgtttccctcgatttgttcaagttcgacatgacaagaaaccagaggaagcgaccaccagt
gcggaggtggcctatttatataagaagcagcaacagattcagaaccagcaggactcggac
tccaatgcctctgactttgagcctgaagatttctattag

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