Paraburkholderia bryophila: NDK50_01905
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Entry
NDK50_01905 CDS
T08797
Symbol
mutM
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pbry
Paraburkholderia bryophila
Pathway
pbry03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NDK50_01905 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbry03400
]
NDK50_01905 (mutM)
Enzymes [BR:
pbry01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NDK50_01905 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NDK50_01905 (mutM)
DNA repair and recombination proteins [BR:
pbry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NDK50_01905 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
C1_2
RNHCP
Motif
Other DBs
NCBI-ProteinID:
WCM20256
LinkDB
All DBs
Position
1:408744..409574
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AA seq
276 aa
AA seq
DB search
MPELPEVEVTRRGIEPYVSGRKVERVDIRTPALRWPIPAELAKTLRGHVVRKVERRGKYL
LFEIDAGWFIVHLGMTGTLRVLRHVPHPPAAAKHDHVDWIFDEFILRYRDPRRFGAVLWH
SREAGDVLEHPLLAGLGVEPFSPAFSGALMHRLTRGRKVSVKQALLAGEIVVGVGNIYAS
ESLFRAGIRPTTAAGRVSLVRYDLLADAVRVTLAAAIEKGGSTLRDFVGSNGESGYFQLD
YFVYDRAGLPCRVCGTPIKQIVQGQRSTYFCPTCQR
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgccagagttgccagaagttgaggttacccgacggggaatcgaaccgtacgtgtccggc
cgcaaggttgaacgcgtcgacatccgtacgcccgcgctgcgctggccgattccggccgag
cttgcgaaaaccttgcgcggtcatgtggtccgtaaggtcgagcggcgcggcaagtatctg
ctgttcgaaatcgacgcgggctggttcattgtgcatcttggcatgactggcacgctgcgg
gtgctgcgccacgtgccacatccgccggccgcggcgaaacatgatcacgtcgactggatt
ttcgacgaattcattctgcgttatcgcgatccccggcgctttggcgcggtgctgtggcat
tcgcgcgaagccggcgacgtgctcgagcatccgctgctcgccgggcttggcgtcgagccg
ttttcgccggcattttccggcgcgctgatgcatcgtctcacgcgcggacgcaaggtctcg
gtgaaacaggcactgctggccggtgaaatcgtggtcggcgtaggcaatatctacgcgtcg
gagagtctgtttcgcgccggcatccggccgaccacggcggccggccgcgtctcgctggtg
cgctacgacctgctcgccgacgccgtgcgcgtgacgctcgccgcggcgatcgagaagggc
ggcagcacactgcgcgatttcgtcggtagcaatggcgaaagcgggtactttcaactcgac
tatttcgtctatgatcgcgcggggctgccgtgccgcgtgtgtggaacgccgatcaaacag
atcgtgcaggggcagcgctccacgtatttctgtcccacctgtcagcgttaa
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