Paraburkholderia bryophila: NDK50_02900
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Entry
NDK50_02900 CDS
T08797
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
pbry
Paraburkholderia bryophila
Pathway
pbry00260
Glycine, serine and threonine metabolism
pbry00460
Cyanoamino acid metabolism
pbry00630
Glyoxylate and dicarboxylate metabolism
pbry00670
One carbon pool by folate
pbry00680
Methane metabolism
pbry01100
Metabolic pathways
pbry01110
Biosynthesis of secondary metabolites
pbry01120
Microbial metabolism in diverse environments
pbry01200
Carbon metabolism
pbry01230
Biosynthesis of amino acids
pbry01240
Biosynthesis of cofactors
pbry04981
Folate transport and metabolism
Module
pbry_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
NDK50_02900
09102 Energy metabolism
00680 Methane metabolism
NDK50_02900
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
NDK50_02900
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
NDK50_02900
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
NDK50_02900
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
NDK50_02900
Enzymes [BR:
pbry01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
NDK50_02900
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Aminotran_5
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-ProteinID:
WCM20439
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Position
1:640202..641449
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AA seq
415 aa
AA seq
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MFDRAQSTIANVDPELWKVIEQENRRQEEHIELIASENYTSPAVMAAQGSQLTNKYAEGY
PGKRYYGGCEYVDIAEQLAIDRVKQLFGAEAANVQPNSGSQANQGVFFAMLKPGDTIMGM
SLAHGGHLTHGSPVNMSGKWFNVVSYGLNEAEDIDYDAAEKLAQEHKPKLIVAGASAFAL
RIDFERLSKIAKSVGAYFMVDMAHYAGLVAAGVYPNPVPFSDFVTTTTHKSLRGPRGGVI
LMKAEFEKQINSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKVYQQQVVENARVLAETL
VKRGLRIVSGRTESHVMLVDLRAKKITGKAAEAALGAAHITVNKNAIPNDPEKPFVTSGV
RLGSPAMTTRGFGVKEAEQVGNLIADVLDNPEDAATIERVRGQVAELTQRFPVYR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacagagcccaaagcaccatcgccaacgtcgatcctgaactctggaaggtcatc
gagcaggaaaaccgccgtcaggaagagcacatcgaactgatcgcgtcggaaaactatacg
agccccgccgtgatggccgcgcaaggctcgcagctcaccaacaaatacgccgaggggtat
ccgggcaagcgctactacggcggctgcgaatacgtcgacatcgccgagcagctggcgatc
gaccgcgtgaagcaactgtttggcgcggaagcggccaacgtccagccgaactcgggctcg
caggcgaaccagggcgtgttcttcgccatgctgaagccgggcgacacgatcatgggcatg
agcctcgcgcacggtggtcacctgacgcacggttcgccggtcaacatgtcgggcaaatgg
ttcaacgtggtcagctacggcctgaacgaagcggaagacatcgactacgacgcggctgag
aagctcgcccaggaacacaagccgaagctgatcgtggccggtgcctcggcatttgcgctg
cgtatcgatttcgagcgcctgtcgaagatcgccaagtcggtcggcgcgtatttcatggtc
gacatggcgcactacgccggcctggtcgccgcaggcgtgtacccgaaccccgtgccgttc
tccgatttcgtcacgaccaccacgcacaagagcctgcgcggcccgcgcggcggcgtgatc
ctgatgaaggccgagttcgaaaagcagatcaactcggctatcttcccgggcattcagggt
ggtccgctgatgcacgtgattgccggtaaggctgttgcgttcaaggaagcgctgtcgccg
gaattcaaggtgtaccagcagcaagtggtcgaaaacgctcgcgtgctggccgaaacgctg
gtcaagcgcggtctgcgtatcgtctcgggccgtaccgaaagccacgtcatgctggtcgat
ctgcgggccaagaagattaccggcaaggctgcggaagccgcactgggcgctgctcacatc
accgtcaacaagaacgcgatcccgaacgacccggaaaagccgtttgtgacgagcggcgtg
cgtctcggctcgccggccatgaccacgcgcggcttcggtgtcaaggaagcggagcaggtg
ggtaatctgatcgccgacgtgctggacaaccctgaagatgccgccacgatcgaacgtgtg
cgcggccaggttgccgagctgacccaacgcttcccggtctaccgttaa
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