Paraburkholderia bryophila: NDK50_04905
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Entry
NDK50_04905 CDS
T08797
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pbry
Paraburkholderia bryophila
Pathway
pbry03030
DNA replication
pbry03430
Mismatch repair
pbry03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NDK50_04905 (dnaE)
03430 Mismatch repair
NDK50_04905 (dnaE)
03440 Homologous recombination
NDK50_04905 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbry03032
]
NDK50_04905 (dnaE)
03400 DNA repair and recombination proteins [BR:
pbry03400
]
NDK50_04905 (dnaE)
Enzymes [BR:
pbry01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NDK50_04905 (dnaE)
DNA replication proteins [BR:
pbry03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NDK50_04905 (dnaE)
DNA repair and recombination proteins [BR:
pbry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NDK50_04905 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
WCM20812
LinkDB
All DBs
Position
1:1110492..1114073
Genome browser
AA seq
1193 aa
AA seq
DB search
MSPMSDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA
RGKGVKPIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEVE
AGWLEAGLGEGLLALSGAQQGDIGLALAAGNEEAARRNALHWAKVFPGGFYIELQRSGQP
GGEQYVQQSVALAAALKLPVVATHPMQFMTQDDFTAHEARVCISEGDILANPRRSKRFTS
EQFFRTQEEMAALFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVLL
SKEGLEKRLEQLYPDAAEREAQRATYYARLEFECGTIIKMGFPGYFLIVADFINWAKNNG
VPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI
QYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIAD
AMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGD
ESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSLAQVPLDDAP
SFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHG
REVVEYPDPRVESVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAE
HRELFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYHTAWLKAHHPAEF
MAANMSLAMDDTDKVKILFEDCLTNKMAVLPPDVNLSAYRFEPVAEADGKRSKTIRYGLG
AIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRIVNRRTVEALIRAGAFDSLHGNRAQ
LIASVSLAMEAAEQASANALQAGLFDMGDAPSQGHELVDEPEWAEKKKLQEEKAALGFYL
SGHLFDAYKGEVRRFVRQKIGELKEGRDKLVAGVIASLRTQMTQRGKMLIALLDDGTGQC
EVTVFNETFEAHKQLFREDELLVVQGQARNDAFTGGIRFTVETVMDLGRARCRYAEAVKV
EMNGNADALALRRVLEAHSAGKDEPAAAAAPVASARGGNGGGRNGGGGGYGGDNGRQRQA
VQIPNGLAVQVVYRSETAQGEMRLGDAWRVKPTDELLAALRGEFAGSSIEIVY
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgtcagatccccgcttcgttcatctccgcgttcactccgaattctcgatt
gccgacggcatcgtgcgtcttgacgacgtcgtcaaggccgccgccaaagacggtcagggc
gcgctcgccctcaccgatctcggcaacgcgttcggcctcgtccgtttctacaaggaagcc
cgtggcaaaggggtcaaacccattgccggctgcgacgtctggatcaccaatcccgatgac
cgcgacaagccttcccgtttgctgctgctggtcaaggaccggcgcggctatctgaatctg
tgcgagttgctcagcaaggcgtcgctcaccaatcagtatcgcggtcgcgccgaagtcgag
gccggctggctcgaagccggcctgggtgaaggtttgctcgcgttgtccggtgcgcagcag
ggcgacatcggccttgcgctcgcggcgggtaacgaagaagcggccagacgcaatgcattg
cattgggcgaaggtcttcccgggcggcttctatatcgagctgcagcggagcggtcagccg
ggcggcgagcagtacgtgcagcagtcggtcgcgcttgccgcggcgctgaagttgccggtg
gtcgccacgcatcccatgcagttcatgacgcaagacgatttcaccgcgcacgaagcgcgc
gtgtgtatttccgaaggcgacattctcgccaatccgcgccgctcgaagcgcttcacgtcc
gaacagtttttccgcacgcaggaagaaatggccgcgctgttcgcggacattccgtcggcg
ctcgccaatacggtcgaaatcgccaaacgctgcaacctcacgctggaacttggcaagccg
aaactgccgctgttccccacgccagacggcatgtcgctcgacgactacctggtgctgttg
tcgaaagaggggctcgagaaacgtctcgaacagttgtacccggacgcggccgaacgggaa
gcgcaacgcgcaacgtactacgcacgcctcgaattcgagtgcggcacgatcatcaagatg
ggctttccgggctacttcctgatcgtggcggactttatcaactgggcgaagaacaacggc
gtgccggtgggaccgggccggggttcgggcgcgggttcgctggtcgcgtatgcgctcggc
gtgaccgacctcgacccgctgcgctacaacctcctgttcgaacgtttcctgaatccggaa
cgggtttcgatgcccgacttcgacatcgacttttgccagcacggccgcgatcgtgtgatc
cagtacgtgaaggaaaagtacggcgcggacgcggtgtcgcaaatcgccacgttcggcacg
atggcggcgaaggcggcggtgcgcgacatcgggcgggtgctcgatctcggctacatgttt
acggacggtatcgccaagctgattccgttcaagcccggcaagcacgtcacgattgccgac
gcgatgaaggaagaaccgctgctgcaggagcgcttcgacaacgaagacgaagtgcatcaa
ctgctcgaactcgcgcagcgcgtggaaggcctcacgcgaaacgtcggcatgcacgcgggc
ggcgtgctgatcgcgcccggcaagctgaccgatttctgtccgctgtacacgcagggcgac
gaaagcggcgtcgtgagccagtacgacaaagacgacgtcgaagccgtcgggctcgtgaag
ttcgactttttgggtctgaccacgctgacgattctcgactgggccgagcgctatatccgc
cgtctcgatccgtcgaagcaggactggtcgctcgcgcaggtgccgctggacgacgcgccg
tcgttctcgatcctgaagaaagcgaataccgtcgcggtgttccagctggaaagccgcggc
atgcaaggcatgctgaaagacgcgcagcctgaccgcttcgaggacatcatcgcgctggtc
gcgttgtaccgtccgggcccaatggacctgattccaagcttctgcgcgcgtaagcacggt
cgcgaagtcgtggagtatccggatccgcgcgtcgaatctgttctgaaagagacctacggc
atcatggtctaccaggagcaggtgatgcagatggcgcagatcatcggcggctattcgctg
ggcggcgccgacttgctgcgtcgcgcgatgggtaagaagaaggccgaggagatggccgag
catcgcgagctgttccgccagggcgccgcgaagaacgggctgaccggcgaaaaggccgac
gaaatcttcgacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggcc
gcgtacgcgctgctcgcgtatcacaccgcatggctgaaggcacaccatccggcggaattc
atggcggcgaatatgtcgctcgccatggacgacacggacaaggtcaagatcctgttcgaa
gactgcctgacgaacaagatggcggtgctgccgccggacgtcaatctgtccgcataccgc
ttcgaaccggtcgccgaggcggacggcaagcgctcgaaaacgatccgctacggtctgggc
gcgatcaagggcagcggccagaacgcgatcgaagaaatcctccgggcgcgtgaagacggg
ccgttcatcgacattttcgatttctgcaatcgcatcgaccgccgtatcgtcaatcgtcgc
acggtcgaggcgttgatccgcgccggtgcgttcgactcgctgcatggcaatcgcgcgcag
ttgatcgcgtcggtatcgctcgccatggaagccgccgaacaggcgagcgccaacgcgctg
caggcggggctgttcgatatgggcgacgcgccgtcgcaaggtcatgaactggtcgacgag
ccggagtgggcggaaaagaagaaactgcaggaagaaaaggccgcgctcggcttttacctg
tctggccacctgttcgacgcatacaagggcgaagtgcgccgttttgtgcgccagaagatc
ggcgaactgaaggaagggcgcgacaagctggtcgccggcgtgatcgcgtcgctgcgcacg
cagatgacccagcgcggcaagatgctgatcgcgctgctcgacgacggcacgggccagtgc
gaagtgacggttttcaacgagaccttcgaagcccacaagcaattgttccgggaagacgag
ttgctggtcgtccaggggcaggcgcgtaacgacgcgttcaccggcggcatccgctttacc
gtcgagacagtgatggacctcgggcgcgcgcgctgccgttatgcggaggccgtgaaggtg
gaaatgaacggcaacgcagacgcgcttgcgttgcggcgcgtgctcgaagcgcatagcgcg
ggtaaggacgagccggcggccgctgcggcgccggttgcgtcggcgcgtggtggtaatggg
ggcggccgcaatggtggtggaggcggttatggcggcgacaacggccgtcagcgtcaggcg
gtgcagatcccgaacgggctggctgtgcaggtggtatatcgcagcgaaaccgcgcagggt
gaaatgcgtctgggcgacgcgtggcgcgtgaagccgaccgacgaactcctcgcggcgttg
cgcggcgagtttgctggcagttcgatcgaaatcgtttattga
DBGET
integrated database retrieval system
