Paraburkholderia bryophila: NDK50_08735
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Entry
NDK50_08735 CDS
T08797
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pbry
Paraburkholderia bryophila
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pbry03009
]
NDK50_08735 (rlmD)
Enzymes [BR:
pbry01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NDK50_08735 (rlmD)
Ribosome biogenesis [BR:
pbry03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NDK50_08735 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
RrnaAD
Methyltransf_23
TRM5-TYW2_MTfase
Methyltransf_15
TRAM
Cons_hypoth95
Methyltrans_SAM
Methyltransf_11
MTS
Motif
Other DBs
NCBI-ProteinID:
WCM21518
LinkDB
All DBs
Position
1:1920214..1921632
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AA seq
472 aa
AA seq
DB search
MSRTAPHRRSPKRQKPSRPAPALVVTGNEPVIEIVALDMEARGVGRVETEDGTPGKVIFV
EGALPGERVSYSTHRSKAKFEQAEVVQVFRESVIRTQPKCSYFDSCGGCSMQHLDIRAQV
AVKQRVLEDNLQHLAKLRPETVFRPIHGPAWGYRYRARLAVRFLPEKGGMRIGFHEKKSS
DIADMKTCEVLPPHISAMLMPLRFMIRKLSIYERLPQIELAVGSSVTAMVLRHLAPVTEA
DEQVLRDFADQHKVQWWLQPGGPETAAPFYPLDQQLDYTLPEYGIRMPFKPTDFTQVNHA
INRVLISRALRLLAPARSDRVLDLFCGIGNFTLPLARIAREVVGIEGSEALTSRALQNAG
LNGVAEHTSFACRNLFEVTADDFRALGHFDKFLIDPPREGALAVARALVEIAQSGNGPLP
KRIVYVSCAPATLARDAGLLVHDAGYRLVGAGVVNMFPHTSHVESIALFERD
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccgaactgccccccatcgtcgctcgccgaagcgacagaagccgtcccgtccggca
cccgcactcgtcgtcaccggcaatgagccggtcatcgaaatcgttgcgctcgatatggaa
gcgcgcggcgtcggtcgcgtcgagaccgaagacggcacgcccggtaaggtgatttttgtc
gaaggcgcattgcctggcgagcgcgtcagctattcgacgcaccgcagcaaggcgaaattc
gagcaggccgaggtcgtgcaggtgttccgcgaaagcgtgatccgcacccagccgaaatgc
agctacttcgatagctgcggcggctgttcgatgcagcatctggatattcgcgcgcaggtc
gcggtcaagcagcgcgtgctcgaggacaatctgcagcatctggcgaagctgcgtccggaa
accgtattccggccgattcacggcccggcttggggttatcgctatcgggcccgtctggca
gtgcgtttcctgcccgaaaagggcggtatgcggatcggcttccacgagaagaaaagcagc
gatatcgccgacatgaagacctgcgaggtgctgccgccgcacatatcggccatgctgatg
ccgctgcgcttcatgatccgcaagctgtcgatctacgaacggctgccgcagatcgagctg
gcggtcggttcgtcggtcaccgccatggtgctgcgccacctggcgccggttaccgaggcc
gacgaacaggttctgcgcgattttgccgaccagcacaaggtgcagtggtggctgcagccg
ggcggcccggaaacggccgcgccgttctatccgctcgaccagcagctcgactacacgctg
ccggaatacggcatccgcatgccgttcaagccgaccgatttcacccaggtgaatcacgcg
atcaatcgcgtgctgatcagccgcgcgttgcggctgctggcgccggcgcgctccgaccgg
gtgctcgatctgttctgcgggatcggcaatttcacgttgccgcttgcgcggatcgcgcgg
gaagtggtggggatcgaaggcagcgaggcgctgacctcgcgcgcgctgcagaacgcgggg
ctgaacggtgtggcggaacatacgtcgtttgcgtgccgcaacctgttcgaagtcaccgcc
gacgacttccgggcgctcggccatttcgacaaattcctgatcgacccgccccgcgaaggc
gcgctggccgtcgcccgcgcactcgtggagattgcgcagagcggcaatggaccgctgccg
aagcgcatcgtctacgtgtcctgcgcgcccgccacgctcgcacgcgatgccgggctgctg
gtgcacgatgccggctaccggctggtgggcgcgggcgtggtgaacatgttcccgcacacc
tcgcatgtggagtcgatcgcgttgttcgagcgggactga
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