Paraburkholderia bryophila: NDK50_08905
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Entry
NDK50_08905 CDS
T08797
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbry
Paraburkholderia bryophila
Pathway
pbry03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NDK50_08905 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbry03400
]
NDK50_08905 (mfd)
Enzymes [BR:
pbry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NDK50_08905 (mfd)
DNA repair and recombination proteins [BR:
pbry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NDK50_08905 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WCM21550
LinkDB
All DBs
Position
1:complement(1963249..1966731)
Genome browser
AA seq
1160 aa
AA seq
DB search
MPDIAASSQSPSPVALVKAGQRFAFDGTHGSSDALLIARYHLAYREKVPLLAVVCESAVD
AQRLSQEIGCFAPEARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPA
TTALYRMPPASFLAGYTFSFAQGERLNEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLLD
LFPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDEAARTAFRSR
WRETFEGDPSRASIYKDIGNGVPSAGIEYYLPLFFEDTATLFHYLPEGAQLAFIGDLDAA
IRRFSNDTKQRYNFLSHDRDRPILEPQRLFLSDEDFYTFAKPFARLVLPANAGGGWSTPL
PNLAIDRHADDPVAALRAYLATTPNRVLFAAESAGRRETLLQLLADNHLRPAASDSFQAW
LSGDARFSLGVAPLATGFAVPVDGIAVITETELYGPLARRAGRRRQEQASNVDSMVRDLS
ELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYSGDSKLYVPVAQLHVISRYSGA
DPENAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEPKDYVKFAE
SFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALL
SPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGTVDIVIGTHKLLS
SDVQFKRLGLVVIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDSVIREAMLRELKRGGQVYFLHNEVETIENRRQMLEALVPE
ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILLHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGT
GEVLGDKQSGEIQEIGFQLYTDMLNDAVKALKEGKEPDLTSPLAATTEINLHAPAILPAD
YCGDVQERLSLYKRLANCEHNDSIDSIQEELIDRFGKLPPQALALVETHRLRLAAKPLGI
SKIDAGEAVIGLQFIPNPPIDAMRIIEMVQKHKHIKLAGQDKLRIETRSPDLAVRVATVK
ETLRALGSPSRGTTATAAAR
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgccagacatcgccgcatcatcgcagtccccctcgcccgtcgcgcttgtcaaggccggc
cagcgtttcgccttcgacggcacgcacggttcgtccgacgcgctgctgatcgcccgctac
catctcgcctatcgcgagaaggtgccgctgctggccgttgtttgcgaaagcgcggtcgac
gcgcagcgtctgtcgcaggaaatcggctgtttcgcacccgaggcgcgggtgcgcctgctg
cccgactgggaaaccctgccttacgataccttttcgccgcaccaggacctggtgtccgag
cgcctcgccacgctgcacgatctcggcgagggccgctgcgacatcctgctggtgcccgcc
accacggcgctgtaccggatgccgccggcctcgttcctcgccggctatacgttctcgttc
gcccagggcgagcgtctcaacgaggcgaagctcaaggcacagctcacgctggccggttac
gaacatgtgagccaggtggtgcgtcccggcgagtactgcgtgcgcggctcgctgctcgat
ctgttcccgatgggctcgccgctgccgtaccggatcgacctgttcgacgatcaggtcgac
tcgatccgtgcgttcgacccggacacgcagcgcagcctttacccggtgaaagacgtgcgc
ctgctgccgggccgcgaattcccgttcgacgaagccgcgcgcaccgcctttcgcagccgc
tggcgcgagaccttcgaaggcgacccgagccgcgcgtcgatctataaagacatcggcaac
ggcgtgccgtcggcgggtatcgaatactatctgccgctgttcttcgaggacaccgcgacg
ctgttccactatctgcccgaaggcgcgcagctggcgttcatcggcgatctggacgcggcg
atccggcgcttcagcaacgacacgaagcagcgctacaactttctgtctcacgaccgcgac
cggccgatcctggaaccgcagcggctgttcctgtcggacgaggatttctacacgttcgcc
aagccgttcgcgcggctcgtgctgcccgcgaacgcgggcggcggctggtcgaccccgctg
ccgaatctcgcgatcgaccgccatgcggacgaccccgtcgccgccttgcgcgcgtatctc
gccaccacgccgaaccgcgtgctgttcgccgccgaatcggcgggccggcgcgaaacgctg
ctgcaattgctggcggacaaccatctgcggccggccgcgagcgacagcttccaggcctgg
ctgagcggcgacgcgcgtttttcgctaggcgtcgcgccgctcgccaccggctttgccgtg
ccggtcgacggtatcgcggtgatcacggaaacggagctgtacggaccgctcgcgcgtcgc
gccgggcgccgccgccaggagcaggcgagcaacgtcgattcgatggtgcgcgatctctcc
gagctgaaggtcggcgatccggtcgtgcattcgcagcacggtatcggccgctatatgggt
ctggtcaccatggacctcggcgaaggcgagaccgaattcctgcacctggagtattccggc
gacagcaagctttatgtgccggtcgcccagttgcatgtgatctcgcgctatagcggggcc
gacccggaaaacgcgccgctgcattcgctcggctcgggccagtgggaaaaagccaagcgc
aaagccgcgcaacagatccgcgacaccgcggccgaactgctgaatctgtacgcacgccgc
gccgcgcgcgaaggccatgcgttcgcgctcgaaccgaaagactacgtgaagttcgccgag
agcttcggcttcgaggaaacgccggaccaggccgccgcgatcgccgccgtgatcggcgac
atgacgagcggcaagccgatggatcgcctggtgtgcggcgacgtcggcttcggcaagacg
gaagtggcgctgcgtgcggcgtttatcgcggtgatgggcggcaagcaggtcgcgctgctc
tcgcccaccacgctgctcgccgaacagcacacgcagaccttcaccgaccgcttctccgac
tggccggtgcgaattgccgaactgtcgcgcttcaagtcgaccaaagaagtgaacgccgcg
atccagcagatcaacgaaggcacggtcgacatcgtgatcggcacgcacaagctgctctcg
tccgacgtgcaattcaagcgcctcgggctcgtggtgatcgacgaggaacaccgcttcggc
gtgcgccagaaggaagcgctgaaggcgctgcgcgccgaagtggacgtgctcacgctgacc
gctacgccgatcccgcgtacgctcggcatggcgctcgaaggcctgcgcgatttctcggtg
atcgccaccgcgccgcaaaaacggctggccatcaagaccttcgtgcgtcgcgaggaagac
agcgtgattcgcgaggcaatgctgcgcgaactgaagcgcggcggccaggtgtacttcctg
cacaacgaagtcgagacaatcgaaaatcgccggcagatgctcgaagcgctcgtgcccgaa
gcgcggatcgcggtcgcgcacggtcagatgcacgagcgcgaactggaacgcgtgatgcgc
gacttcgtcgcccaacgcgccaacgtgctgctgtgtacgacgattatcgaaaccggcatc
gacgtgccgagcgccaacacgatcctgctgcaccgcgccgacaagttcggtctcgcgcaa
ttgcatcagttgcgcggccgcgtgggccgctcgcatcaccaggcgtacgcgtatctgctg
gtgcacgatccgcaagggctgaccaaacaggcgcaacgccgcctcgaagcgatccagcag
atggaagaactcggttcgggcttctatctggccatgcacgacctggagattcgcggcacc
ggcgaagtgctcggcgacaagcagtcgggcgagattcaggagatcggcttccagctctac
accgacatgctgaacgacgcggtgaaagcgctcaaggaaggcaaggagccggacctcact
tcgccgctcgccgccaccaccgagatcaacctgcacgcgccggcgattctgcccgccgac
tattgcggcgacgtgcaggagcgtctgtcgctctacaagcgcctggctaattgcgaacac
aacgattcgatcgacagcatccaggaagagctgatcgaccgcttcggcaagttgccgccg
caagcccttgcgctggtggagacgcaccggctgcggctggcggcgaagccgctcggcatt
tcgaagatcgatgcgggcgaagcggtgatcggcttgcagttcatccccaatccgccgatc
gacgccatgcggatcatcgagatggtgcagaagcataagcacatcaagctcgcgggtcag
gacaagctgcgcatcgaaacgcgcagcccggatctcgcggtgcgcgtcgcgacggtcaag
gagaccttgcgtgcgctcggttcgccgagccgcggcacgaccgccaccgccgccgcgcga
tga
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