Paraburkholderia bryophila: NDK50_11680
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Entry
NDK50_11680 CDS
T08797
Name
(GenBank) 2'-5' RNA ligase family protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pbry
Paraburkholderia bryophila
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pbry03016
]
NDK50_11680
Enzymes [BR:
pbry01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
NDK50_11680
Transfer RNA biogenesis [BR:
pbry03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
NDK50_11680
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Gene cluster
GFIT
Motif
Pfam:
2_5_RNA_ligase2
LigT_PEase
Motif
Other DBs
NCBI-ProteinID:
WCM18139
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All DBs
Position
1:complement(2601807..2602409)
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AA seq
200 aa
AA seq
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MPEQFWLPGLEAPPTPTDGLFFAVFPGIQTAAGVAKFAQQLCVEARVRSKPLAAGRLHVT
LQHLGNFAGGLPQARVDAAMQAGASIRMEPFTVEFDSVVSFAARPRAGPLVLGGGAGVAG
LHALHDALAAALRGAGAGDAAPSATVPYTPHVTLAYGMPWAATRPIEPVSWNVREFALMH
SLLGRTRHVALARWRLAGVV
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaattctggctgcccgggctcgaggcgccccctacaccgacagacggcctg
tttttcgcggttttccccggtatccagacggccgccggcgtcgcgaagttcgcgcaacag
ttatgcgtcgaggcgcgcgtgcgcagcaagccgctggcggcggggcgcttgcacgtcacg
ttgcagcacctcggcaatttcgcgggtggtctgccgcaggcgcgcgtcgacgcggcgatg
caggcgggggcatccattcgcatggagccgtttaccgtcgagttcgattcggtggtcagc
ttcgcggcgcggccccgggcgggccccttggtgctgggcggcggcgcgggcgtggccggt
ttgcatgcccttcacgacgcactcgccgcggctctgcgaggcgcgggtgccggagatgcg
gcgccatcggcaacggtgccttacacgccgcatgtcacgctcgcttacggcatgccctgg
gcggcgacacgtcccatcgaacccgtcagttggaacgtgcgcgaatttgcgctgatgcac
agtttgctcgggcgtacccggcatgtcgcgctcgcgcgctggcggctggcgggcgtcgtt
tga
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