Paraburkholderia bryophila: NDK50_11690
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Entry
NDK50_11690 CDS
T08797
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pbry
Paraburkholderia bryophila
Pathway
pbry03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NDK50_11690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbry03400
]
NDK50_11690
Enzymes [BR:
pbry01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
NDK50_11690
DNA repair and recombination proteins [BR:
pbry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NDK50_11690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
WCM18141
LinkDB
All DBs
Position
1:2603934..2605442
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AA seq
502 aa
AA seq
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MHAVLIDDHFAAWRAASLEALNRGLAPETIEWRVKAAPASLPESPQTLTLFECHEPREVA
PSPTRGVQVSKELAALLQDAALFRDPQRWAFLYKVLWRWQHGDRTVASPADADGARLHRM
AKSVRRAKHDMIAYVRFRGQTAAAPTPEYIAWYEPAHDVLRWAAEHFSQRMGRSTWMIAT
PHGAAFWDGDQLHLEQRRALPDEHRGNPEDDAEALWLAYYRSTFNPARLNQAALEQHMPV
RFWKGLPEAHLIPTLISAAKSGAQRVAQAGSVGALDGKSIPVEAEFAQPAREPPSSLDRC
RRCELWRHATQAVGGSGPGDARIMLIGEQPGDQEDLAGQPFVGPAGQLLDNAIARAGLLR
AQLYLTNAVKHFKWEPRGKRRLHKTPGQQEIAACGYWLERELRAVRPVVIVALGATALNA
LLQRKVSLKDYTGAPFEAAGGWAIATWHPSFALRQQSDASRDKVLGEIGNALMRARRLAE
ELLAPDTQTQTQTQTQRDYPQG
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgcatgccgttctgatcgacgaccacttcgccgcgtggcgcgcagcgtccctcgaagcg
ttgaatcgaggtctcgctccagagacgatcgaatggcgcgtcaaggcggcgcccgcatcg
ctgcccgagtcgccacaaaccctcacgttattcgagtgccacgagccgcgtgaggtcgcg
ccgtcgcccactcgcggcgtgcaggtctcgaaggaactggcggcgctgttgcaagacgcc
gcgctgtttcgcgatccgcagcgctgggcgtttttatacaaggtgctatggcgttggcaa
cacggcgaccgcacggtcgcgtcgccggccgacgcggatggcgcgcggctccatcgcatg
gcaaaaagcgtgcggcgtgcgaagcacgacatgatcgcctacgtgcggtttcgcgggcag
acggcggcggcgcccacgcccgaatacatcgcgtggtacgaaccggcgcacgacgtgctg
cgctgggccgccgaacatttttcgcagcgcatggggcgctcgacatggatgatcgcgacg
ccgcacggcgccgcattctgggacggcgatcaactgcatcttgaacagcggcgcgcgctg
ccggacgagcatcgcggcaatcccgaagacgacgccgaggcactttggctggcctactac
cgcagcacgttcaatccggcgcggctgaaccaggcagcactcgagcagcacatgccggtg
cgtttctggaaaggtttgccggaagctcatctgatccccaccctgatcagcgcagcgaaa
agcggcgcgcagcgcgtggcgcaagcgggtagcgtgggcgcgctcgacggcaaatcgatt
ccggtcgaagcggaattcgcgcaaccggcgcgcgagccgccgtcatcgctcgaccgttgc
cggcgttgcgaactatggcggcacgccacccaggcagtcggcggttcagggccgggcgat
gcgcgaatcatgctgatcggcgagcagcccggcgatcaggaagatctggccggccagccg
ttcgtcgggccggcggggcagctactcgacaacgcgatcgcgcgtgcgggtttgttgcgc
gcgcagctttatctgaccaacgcggtcaaacatttcaagtgggaaccgcgcggcaaacgc
agattgcacaaaacgcccgggcagcaggaaatcgccgcctgtgggtattggctcgagcgg
gaattgcgggcggtgcgcccggtcgtgatcgtcgcgctcggcgccacggcactgaatgcg
ttactgcaacgaaaagtcagcctgaaggactataccggcgcaccttttgaagcggcgggc
ggctgggccatcgcgacctggcacccgtcgttcgcgctgaggcagcaaagcgacgcgagt
cgcgacaaagtgctgggggagatcggcaacgcgctcatgcgggcgcgtcggctagcggaa
gaattgctcgcgcccgacacgcaaacgcaaacgcaaacgcaaacgcaacgcgattatccg
caaggttga
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