Paraburkholderia bryophila: NDK50_13285
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Entry
NDK50_13285 CDS
T08797
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pbry
Paraburkholderia bryophila
Pathway
pbry03410
Base excision repair
pbry03430
Mismatch repair
pbry03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NDK50_13285 (recJ)
03430 Mismatch repair
NDK50_13285 (recJ)
03440 Homologous recombination
NDK50_13285 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbry03400
]
NDK50_13285 (recJ)
DNA repair and recombination proteins [BR:
pbry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NDK50_13285 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NDK50_13285 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NDK50_13285 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WCM18426
LinkDB
All DBs
Position
1:2971728..2973434
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AA seq
568 aa
AA seq
DB search
MTRIVTRTCSPVDAEVLTRHGLHPVLARLYAARGVCMPDEIETGLARLVPPAGLKGCEDA
AALLADAIQQKRRMLVVADYDCDGATACAVAVRGLRMFGGQIDYLVPNRFEYGYGLTPEI
VALAARNPSGKPELLITVDNGIASVDGVAAANALGIDVLVTDHHLPGDELPAARAIVNPN
QPGCTFPSKCIAGVGVMFYVLLALRAELRRRGAFGDDFPEPRLDGLLDLVALGTVADVVK
LDGNNRVLVAQGLQRIRKGKMQPGIAALFRAAAREARSASGFDLGFALGPRLNAAGRLSD
MSLGIECLTTDDIGRAWDLAQQLDTMNRERREIEAGMQQQALEDLSAIDPEGATTITLFN
PSWHQGVIGIVAGRLKEKFHRPSFTFALADDSGQTVKGSGRSISGFHLRDALDLISKREP
GLIAKFGGHAMAAGLTLAAADVPRFTAAFEAVGREWLSAEALSRTVETDGELEDAYFTPQ
FVDMLDAAVWGQGFPAPVFSGEFDVASQALVKDKHLKLQLVRGRQRFNAIWFNHTDTLPA
RTTVAYRLASDTWNGVSRVQLIVEHAAS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgactcgaatcgttacgcgcacctgctcccccgtcgacgccgaagtgctcacccgccac
ggcctgcacccggtgctcgcgcgtctctacgcggcgcgcggcgtgtgcatgccggatgaa
atcgaaaccggcctcgcccggctcgtcccgcccgccggcctcaaaggctgcgaggacgcc
gccgcgctgctcgccgacgcgatccagcagaagcgccgcatgctggtggtcgccgactac
gattgcgacggcgccaccgcctgtgcggttgcagtgcgcggcctgcgcatgttcggcggc
cagatcgactatctggtgccgaaccgcttcgaatacggctacggcctgacgccggagatc
gtcgcgctggccgcgcgcaacccgtcgggcaaaccggaactgctgattaccgtcgacaac
ggcatcgccagcgtcgacggcgtggcagcggccaacgcgctcggcatcgacgtgctggtc
accgaccaccatctgcccggcgacgaattgccggccgcccgcgcgatcgtcaatccgaac
cagccgggctgcacgttcccgagcaagtgcattgccggggtcggcgtgatgttttacgtg
ctgctggcgttgcgcgcggaattgcggcggcgcggcgcgttcggcgacgactttccggag
ccgcgtctggacggcctgctcgatctggtcgcgctcggcacggtcgccgacgtcgtcaag
ctcgacggcaataaccgcgtgctggtggcgcaaggcctgcagcgcatccgcaaaggcaaa
atgcagccgggcatcgccgcgctgtttcgcgccgccgcgcgcgaggcgcgcagcgcgtcg
ggcttcgacctcggcttcgcgctcgggccgcggctgaacgcggcgggccgcttgtcggac
atgtcgctcgggatcgaatgcctgaccaccgacgacatcggccgcgcatgggatctcgcg
caacaactcgacacgatgaaccgcgagcgccgcgaaatcgaagccggcatgcagcagcag
gcgctcgaggatctctcggcgatcgacccggaaggcgcgaccaccatcacgctgttcaat
ccgtcgtggcatcagggcgtgatcggcatcgtcgcgggtcgtctgaaggaaaaattccac
cggccttcgtttaccttcgcgctcgccgacgacagcggccagaccgtcaaaggctcgggc
cgttcgatttcgggcttccacctgcgcgacgcgctcgatctgatctcgaagcgcgagccg
ggcctgattgccaaattcggcggccacgccatggcagcgggcctgacgctcgccgccgcc
gacgtgccgcgcttcaccgccgcgttcgaggcggtcggccgcgaatggctgtccgcggag
gcgctgtcgcgcaccgtggaaaccgacggcgaactcgaagacgcctacttcacgccgcaa
ttcgtcgacatgctcgacgccgccgtgtggggccaaggcttcccggcgccggtgttttcg
ggcgaattcgacgtcgcgtcgcaggcgctggtgaaggacaagcatctgaagctgcaactc
gtgcgcggccgccagcgcttcaacgcgatctggttcaaccacaccgacacgctgcccgcg
cgcaccaccgtcgcttaccggctggcgagcgatacgtggaacggcgtgtcgcgcgtgcag
ctgatcgtcgagcacgcggcgagctga
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