Paraburkholderia bryophila: NDK50_17695
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Entry
NDK50_17695 CDS
T08797
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbry
Paraburkholderia bryophila
Pathway
pbry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NDK50_17695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbry03019
]
NDK50_17695
Enzymes [BR:
pbry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NDK50_17695
Messenger RNA biogenesis [BR:
pbry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NDK50_17695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
Sacchrp_dh_NADP
CMS1
P-loop_SecA
Utp25_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WCM19234
LinkDB
All DBs
Position
1:3937128..3938678
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AA seq
516 aa
AA seq
DB search
MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLNTMPAVTTGAGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ
IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP
PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH
LIKQHNWFQVLVFTRTKHGANRLAEQLTKDDISALAIHGNKSQSARTRALAEFKDGTLQV
LVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLVCVDELQLLK
DIEKLIKRPVPQEVIAGFEPDPTAKPEPILRRGQGGGGGGGGRSPRQGQGAPKRDGAGAA
KPAQRSGQRPAGGQQQPKPQGAKPAGNGGQPRRDGQRQDDRPRAVAHEGSGAQHAPRKPQ
GAKPQGGNPGALLGGAKPRNDAPRGGQPSRSGQRGR
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctcggcttgtccgaaccgctggtccgcgctgtacacgaactcggc
tacaccaccccgactccgatccagacccaggctatcccggccgtgctcaacggcggcgat
ctgctggccggcgcgcagaccggtaccggcaagaccgccggtttcacgctgccgatcctg
cagcgtctgaacaccatgccggccgtcacgacgggcgccggcaagcgcgccgtgcgcgcg
ctgatcctcacgccgacgcgtgaactggcagcgcaggtcgaagaaagcgtgcgcgcgtat
ggcaagtatctgaagctgaagtcgaccgtgatgttcggcggcgtcggcatcaatccgcag
atcggcgcgctgcgcagcggcgtggacatcgtcgtggcgacgccgggccgtctgctcgat
cacatgcagcagaagaccatcgacctgtcgcatctcgagattctcgtgctcgacgaagcc
gaccggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagttgccg
cccaagcgtcagaacctgctgttttcggcaaccttctccgacgagatcaagacgcttgcc
gacaacctgctcgactcgccggcgctgatcgaagtggcgcgccgtaacaccacggcggaa
acggtcgcgcaaaagattcacccggtggatcgcgacaagaagcgcgagctgctcacgcat
ctgatcaagcagcacaactggttccaggtgctggtgttcacgcgcaccaagcacggcgcg
aatcgtctggccgagcaattgaccaaggacgacatcagcgccctcgcgattcacggtaac
aagagccagtcggcgcgtacacgcgcgctggccgagttcaaggacggcacgctgcaggtg
ctggtggcgacggacatcgccgcacgcggtatcgatatcgaccaactgccgcacgtggtc
aactacgatctgccgaacgtgccggaagactacgtgcaccgcatcggccgtacgggccgc
gcgggcgcgacgggcgaagcgatttcgctggtgtgcgtcgatgaactgcaattgctgaag
gacatcgagaagctgatcaagcgtccggtgccgcaagaagtgattgccggtttcgagccg
gatccgaccgcgaagccggagccgattctgcgtcgcggtcagggtggcggcggtggtggc
ggcggacgttcgccgcgtcagggtcaaggcgcaccgaagcgtgatggcgcgggtgccgcg
aagccggcgcaacgctcgggtcaacgccccgccggcggccagcaacagccgaagccgcaa
ggcgcgaagccggccggcaacggcggccagccgcgccgcgacggtcagcgtcaggacgac
cgtccgcgcgcggtcgcgcatgaaggcagcggcgcgcagcatgcgccgcgcaagccgcag
ggcgcaaagccgcaaggcggtaatccgggcgcgttgctgggtggcgcgaagccgcgcaac
gatgcgccgcgtggcggccagccgtcgcgcagcggtcagcgcgggcgttaa
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