Paraburkholderia bryophila: NDK50_18210
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Entry
NDK50_18210 CDS
T08797
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pbry
Paraburkholderia bryophila
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pbry03016
]
NDK50_18210
Enzymes [BR:
pbry01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NDK50_18210
Transfer RNA biogenesis [BR:
pbry03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NDK50_18210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
WCM19334
LinkDB
All DBs
Position
1:complement(4050306..4052447)
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AA seq
713 aa
AA seq
DB search
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPGAAELMQQADTA
AQEIDLDFLWECAPEDEFPFAALGAEYFGEGFGATERAALVLRLHGSPVYFRRKGRGMYQ
RAPQEQLKMALAGLERKRQQALVQAGYEDELKAGHLPEGFTGSKALGLLTKPDKNTIEYK
ALEAAAAARGISQARLMLDNGAIPSARALHEAKFLSEFFPHGTGFPPVTVGSLPEDLPEA
DVQAFSIDDITTTEIDDAFSVEHLGDGRLRIGVHIAAPALGIQRGDEVDEIARTRLSTVY
MPGDKITMLPDSVVEAFTLAEGGLRPALSLYVIVNRETQEIVASETRAERVFVKNNLRHN
TLDELVTEEALAAGTGEYPHKEDIAVLWPFAQALFEKRQAARAGYGLRREVQRNTDFNFY
VEGEHITITPRRRGSPLDTIVAELAILANSSWGAFLHDHGVPGIYRTQRAFGAPTGPKRT
RMQTNAAPHEGLGVTQYAWSTSPLRRYVDLVNQWQLIACVQHGVTAKLAAPFKPKDADLF
AVVQGFDDTYSAYADYQRRMEYFWCLRWLKQENRKQVVASVVKGDLVRLEEIPLLLHVPG
LGVHARGTRLQMEVMSLDELTVEASVRLLHVLDAPAVASGSEAEEAEEADESEEEIVDAP
DESAEGEAEAQAEAELDGTEASAGGNGDADSAGTTDSTAATAAADQHIAEPGR
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttctttgaggaatcgggcagtttcaaggcgggcagcgtgctgtcgcgccag
ggcgatgcttttcaggtcgagctgccgggcggccggcgcgccaaggtgcgcgccaaagac
gtgttgatcgaattcgaaaaaccgggtgcagccgagctgatgcagcaagccgacacggcc
gcgcaggagatcgatctcgacttcctgtgggagtgcgcgcctgaagacgaattcccgttc
gccgcattgggcgcggagtatttcggcgaaggcttcggtgcgaccgagcgtgccgccctg
gtgctgcgcctgcatggttcgccggtgtacttccgccgcaagggccgcggcatgtatcag
cgcgcgccgcaggagcaactgaaaatggcgctggccggcctcgagcgcaagcgccagcag
gcgctggtgcaagcgggctacgaagacgagctgaaggcaggccatctgccggaagggttc
accggcagcaaggcgctggggctgctcaccaagcccgacaagaacacgatcgaatacaag
gcgctcgaagccgccgctgcggcgcgcggtatttcgcaggcgcgtctgatgctcgacaac
ggcgcgattccgtccgcgcgcgcgctgcacgaggcgaaattcctgtcggaatttttcccg
cacggcaccggattcccgccggtcacggtcggcagcttgccggaagatctgccggaagcc
gacgtgcaagccttctcgatcgacgacatcaccaccactgaaatcgacgacgcgttctcg
gtcgagcatctgggcgacggccgtttgcggatcggcgtgcacatcgccgcgccggcgctc
gggattcagcgtggcgacgaggtcgacgagatcgcgcgcacgcgcctgtccaccgtctat
atgccgggcgacaagatcaccatgctgcccgacagcgtcgtcgaagcgttcacgctggcc
gagggcggtttgcgtccggcgctgtcgctttatgtgatcgtcaatcgcgaaacgcaggaa
atcgtcgcgagcgaaacgcgcgccgagcgcgtgttcgtgaagaacaacctgcgtcacaac
acgctcgacgaactcgttaccgaagaggcgctcgccgccggcaccggcgagtatccgcac
aaggaagacatcgccgtgctgtggccgttcgcgcaggccttgttcgaaaagcgccaggcc
gcgcgcgccggttacggtctgcgtcgcgaggtgcagcgcaataccgacttcaacttctac
gtggaaggcgagcacatcacgatcacgccgcgtcggcgcggttcgccgctcgacacgatc
gtcgccgagctggcgattctggccaactcgtcgtggggcgcgttcctgcacgaccacggc
gtgccgggcatctatcgcacgcagcgcgcgttcggcgcgccgaccgggccgaagcgcacc
cgtatgcagaccaacgccgcaccgcatgagggtctcggcgtcacgcaatacgcgtggagc
acgtcgccgctgcgccgttacgtcgacctggtgaatcagtggcagttgatcgcctgcgtg
cagcatggcgtgaccgccaagctggccgcgccgttcaagccgaaggacgccgatctgttc
gccgtcgtgcaaggtttcgacgacacctacagcgcgtacgccgattaccagcgtcgcatg
gagtacttctggtgcctgcgctggctgaagcaggagaatcgcaagcaggtggtggcgtcg
gtggtgaagggcgatctggtgcgtctcgaagagattccgttgttgctgcacgtgccgggc
ctcggcgtgcatgcacgcggcacgcgtctgcagatggaagtcatgtcgctcgacgaactg
actgtcgaagcgtccgtgcgtctgctgcacgtgctcgacgcaccggctgtggcgagcggc
agcgaggctgaagaagccgaggaagccgacgaaagcgaagaagagatcgtcgacgcgccg
gacgaaagcgccgaaggcgaagccgaggctcaggccgaagcggagctcgacggcaccgag
gcgagcgccgggggcaacggcgacgcggacagcgccggcacgaccgattcaaccgccgca
accgccgccgccgaccagcacatcgcggagccgggacgatga
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