Paraburkholderia bryophila: NDK50_18565
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Entry
NDK50_18565 CDS
T08797
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
pbry
Paraburkholderia bryophila
Pathway
pbry00470
D-Amino acid metabolism
pbry00550
Peptidoglycan biosynthesis
pbry01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
NDK50_18565 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
NDK50_18565 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pbry01011
]
NDK50_18565 (murD)
Enzymes [BR:
pbry01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
NDK50_18565 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
pbry01011
]
Precursor biosynthesis
Amino acid ligase
NDK50_18565 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
MurD-like_N
Mur_ligase_C
DUF6798
Motif
Other DBs
NCBI-ProteinID:
WCM19401
LinkDB
All DBs
Position
1:complement(4130016..4131530)
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AA seq
504 aa
AA seq
DB search
MFGEKFRDRQKPMVLVLGLGESGLAMARWCARHGCRLRVADTREVPPNLSALEAHRVDAE
FVGGGFSPALLDGIELVAISPGLSPLAADLLPLIAAAREQGIPVWGELELFSLALQTLGE
SGYAPKVIAITGTNGKTTTTSLTGLLCERAGKKVAVAGNISPSLLDKLSEAIDNTALPDV
WVLELSSFQLETAHTFAPDAAAVLNITQDHLDWHGGLDAYAAAKGRIFGPKTVRVLNRDD
ARVMSLAPSAESEVDVVTFGVTEPKNDGDYGLLRENGIVWLVAAHDLDVSDEPVPRRRRK
NEAVALPNIALKRLMPADALRIRGLHNAANALAAYALARAVGLPGAPLLHGLREYRGEPH
RVELIASIEGIDYVDDSKGTNVGATVAALDGLAQRVVLIAGGDGKGQEFDPLAAPVMRWC
RAVMLIGRDAPQIRAALEHTGIALTDHVTLEDATRAATALAQPGDAVLLSPACASFDMFR
GYAHRAEVFRGTVEDIAAERGTMI
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgttcggcgagaagtttcgggatcggcaaaagccgatggtgctcgtgctgggactgggt
gaatccggtctcgcgatggcgcgctggtgcgcgcggcacggctgtcggctgcgtgtggcc
gatacgcgcgaggtgccgccgaacctgtccgcgctggaagcgcaccgcgtcgacgccgaa
ttcgtcggtggcgggttttcgccggcgttgctcgacgggatcgaactcgtggcgatcagc
cccggtttgtcgccgctcgccgccgacctgctgccgttgattgccgccgcgcgcgagcag
ggcattccggtttggggcgaactcgaactgttctcgctggcgttgcagacgctcggcgaa
agcggctacgcgccgaaggtgatcgcgatcaccggcaccaacggcaagaccaccacgacg
agcctgaccggcctgctgtgcgaacgcgccggcaagaaggtcgcggtggcgggcaacatc
agcccgtcgctgctcgacaagctcagcgaagcgatcgacaacaccgcgctgcccgacgtg
tgggtgctggaactgtcgagcttccagctcgaaaccgcgcacacgttcgcaccggacgcg
gccgcggtgctgaatatcacgcaagaccatctggactggcacggcgggctcgatgcctat
gccgccgcgaagggccgcatcttcggacccaaaacggtgcgcgtgctgaatcgcgacgat
gcacgcgtcatgtcgctcgcgccttcggcagagagcgaagtcgacgtcgtgacattcggc
gtcaccgagccgaagaacgacggcgactacggtttgctgcgcgagaacggcattgtctgg
ctggtcgcggcgcatgacctcgacgtgagcgatgagccggtgcccaggcgccgtcgcaag
aacgaagccgtggcgctgccgaacatcgcgctgaagcgcttgatgccggccgacgcgttg
cgtattcgcggtttgcacaatgccgcgaacgcgctggccgcgtacgcgcttgcacgcgcc
gtcggtttgccgggcgcgccgctgctgcacggtctgcgtgaataccgtggcgagccgcat
cgggtggaattgatcgcgtcgatcgaaggcatcgattacgtggacgacagcaagggcacc
aatgtcggcgcaacggtcgccgcactcgacggcctcgcgcaacgcgtggtgctgatcgcc
ggcggcgacggcaagggtcaggagttcgacccgctcgccgcgccggtcatgcgttggtgc
cgcgccgtgatgctgatcggccgcgacgcgccgcagattcgcgcggcgctggaacacacc
ggcattgcgctgacggatcacgtcacgctcgaagacgcgacgcgtgccgccaccgcgctg
gcgcaaccgggcgacgccgtgctgctgtcgccggcctgcgcgagcttcgacatgttcagg
ggttacgcgcaccgcgccgaagtatttcgcggcacggtggaagacatcgcggccgaacgg
gggacgatgatatga
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